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Sample GSM41893 Query DataSets for GSM41893
Status Public on Feb 10, 2006
Title WT_2h:Blank_2h - mAdb ID 49504
Sample type RNA
 
Channel 1
Source name Blank_2h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name WT_2h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 49504
Flp-In TREx 293 cells stably transfected with wild type-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 2 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.1p13-061803
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 2
SAMPLE: WT_2h:Blank_2h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 0.219 1.164 1 1 1 1457 418 369 222 1790 373 372 117 0 0.219
1174364_1 0.485 1.400 1 1 2 5227 2096 358 166 5648 1931 372 111 0 0.485
1175152_1 -0.291 0.818 1 1 3 891 364 386 185 1305 404 368 100 0 -0.291
1175940_1 0.200 1.149 1 1 4 1245 348 381 188 1518 326 377 104 0 0.200
1176716_1 0.679 1.601 1 1 5 6902 1408 394 202 6526 1534 358 137 0 0.679
1177504_1 0.945 1.926 1 1 6 3820 758 404 212 3016 642 325 145 0 0.945
1178580_1 0.224 1.168 1 1 7 6402 2813 426 201 8104 3663 340 125 0 0.224
1179356_1 -0.356 0.781 1 1 8 780 321 439 197 1022 285 360 137 0 -0.356
1180144_1 0.939 1.917 1 1 9 6751 2378 423 221 5356 1827 349 115 0 0.939
1180932_1 -0.454 0.730 1 1 10 686 372 378 193 997 310 357 107 0 -0.454
1181708_1 0.240 1.181 1 1 11 1419 747 410 215 1656 697 360 133 0 0.240
1182496_1 -0.944 0.520 1 1 12 558 261 410 208 785 192 353 107 0 -0.944
1183572_1 48.542 1 1 13 445 190 413 207 372 86 376 114 -50 5.601
1184348_1 0.537 1.451 1 1 14 1583 589 458 252 1550 489 374 163 0 0.537
1185136_1 0.316 1.245 1 1 15 1372 460 521 216 1448 485 411 165 0 0.316
1185924_1 -0.016 0.989 1 1 16 807 375 425 208 941 279 355 118 0 -0.016
1186700_1 0.375 1.297 1 1 17 2060 756 448 205 2231 569 346 105 0 0.375
1187488_1 0.328 1.255 1 1 18 1219 447 424 215 1305 346 344 114 0 0.328
1188564_1 5.688 1 1 19 441 181 426 211 346 88 342 109 -50 2.508
1189340_1 -0.043 0.971 1 1 20 1552 668 437 200 2102 812 360 124 0 -0.043

Total number of rows: 21794

Table truncated, full table size 1521 Kbytes.




Supplementary data files not provided
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