NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM41894 Query DataSets for GSM41894
Status Public on Feb 10, 2006
Title R80A_1h:Blank_1h - mAdb ID 51476
Sample type RNA
 
Channel 1
Source name Blank_1h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name R80A_1h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 51476
Flp-In TREx 293 cells stably transfected with R80A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 1 hr of doxycycline treatment
Array Print: Hs-OperonV2-vB1.1p13-061803
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 1
SAMPLE: R80A_1h:Blank_1h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.631 0.646 1 1 1 1718 489 413 206 3206 639 658 182 0 -0.631
1174364_1 0.520 1.434 1 1 2 11196 2551 434 196 10143 2129 677 193 0 0.520
1175152_1 -0.630 0.646 1 1 3 1401 461 432 212 2566 563 675 189 0 -0.630
1175940_1 0.282 1.216 1 1 4 2959 741 432 219 3284 653 663 186 0 0.282
1176716_1 0.491 1.405 1 1 5 12146 4474 447 232 11165 2597 664 195 0 0.491
1177504_1 0.792 1.732 1 1 6 8882 2144 451 246 6800 1434 659 306 0 0.792
1178580_1 0.341 1.267 1 1 7 7350 1556 475 222 7513 1638 668 306 0 0.341
1179356_1 -0.792 0.578 1 1 8 1001 361 466 211 1831 395 663 182 0 -0.792
1180144_1 0.332 1.259 1 1 9 8349 1785 482 218 8558 1585 678 195 0 0.332
1180932_1 -0.583 0.667 1 1 10 977 387 460 209 1646 438 669 178 0 -0.583
1181708_1 0.324 1.252 1 1 11 2440 1178 449 205 2663 847 657 175 0 0.324
1182496_1 -1.138 0.454 1 1 12 717 214 427 212 1456 280 651 197 0 -1.138
1183572_1 0.070 1 1 13 442 162 462 214 665 213 647 198 -50 -3.835
1184348_1 0.082 1.059 1 1 14 1615 645 471 202 2022 628 659 190 0 0.082
1185136_1 0.324 1.252 1 1 15 2703 1682 444 202 2909 1476 633 171 0 0.324
1185924_1 -0.456 0.729 1 1 16 957 312 432 226 1562 415 654 224 0 -0.456
1186700_1 0.532 1.445 1 1 17 4798 1550 437 203 4460 1112 655 219 0 0.532
1187488_1 -0.007 0.995 1 1 18 1668 783 445 192 2211 636 661 176 0 -0.007
1188564_1 0.705 1 1 19 471 174 438 214 700 186 641 178 -50 -0.503
1189340_1 0.201 1.149 1 1 20 2623 1028 419 203 3054 770 635 179 0 0.201

Total number of rows: 21794

Table truncated, full table size 1554 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap