NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM41899 Query DataSets for GSM41899
Status Public on Feb 10, 2006
Title WT_6h:Blank_6h - mAdb ID 49507
Sample type RNA
 
Channel 1
Source name Blank_6h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name WT_6h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 49507
Flp-In TREx 293 cells stably transfected with wild type-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 6 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.1p13-061803
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 6
SAMPLE: WT_6h:Blank_6h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.652 0.636 1 1 1 659 162 196 86 1253 287 289 78 0 -0.652
1174364_1 0.290 1.223 1 1 2 4317 1311 190 71 4751 1329 279 74 0 0.290
1175152_1 -0.532 0.692 1 1 3 521 204 191 69 914 270 282 75 0 -0.532
1175940_1 -0.211 0.864 1 1 4 582 184 213 89 852 178 286 77 0 -0.211
1176716_1 0.301 1.232 1 1 5 3679 783 210 79 3989 828 257 71 0 0.301
1177504_1 0.561 1.475 1 1 6 1265 250 212 83 1205 238 259 76 0 0.561
1178580_1 0.275 1.210 1 1 7 4636 1071 181 65 5154 1013 275 71 0 0.275
1179356_1 -0.549 0.683 1 1 8 343 134 163 62 615 125 266 67 0 -0.549
1180144_1 0.619 1.536 1 1 9 1649 551 176 71 1534 517 263 62 0 0.619
1180932_1 -0.718 0.608 1 1 10 375 152 186 81 683 156 271 66 0 -0.718
1181708_1 -0.186 0.879 1 1 11 540 259 191 85 796 155 270 74 0 -0.186
1182496_1 -0.968 0.511 1 1 12 301 108 191 79 562 136 277 68 0 -0.968
1183572_1 0.147 1 1 13 189 63 189 85 278 67 269 73 -50 -2.764
1184348_1 0.074 1.053 1 1 14 523 207 183 68 675 153 247 78 0 0.074
1185136_1 -0.074 0.950 1 1 15 662 189 206 67 920 237 284 77 0 -0.074
1185924_1 -0.101 0.933 1 1 16 538 202 198 74 753 234 270 70 0 -0.101
1186700_1 0.257 1.195 1 1 17 961 337 190 78 1132 386 277 76 0 0.257
1187488_1 0.040 1.028 1 1 18 529 209 172 74 720 184 260 73 0 0.040
1188564_1 0.393 1 1 19 204 68 196 73 293 70 266 67 -50 -1.349
1189340_1 -0.017 0.988 1 1 20 934 354 183 79 1274 475 267 70 0 -0.017

Total number of rows: 21794

Table truncated, full table size 1494 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap