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Sample GSM41903 Query DataSets for GSM41903
Status Public on Feb 10, 2006
Title R80A_4h:Blank_4h - mAdb ID 51478
Sample type RNA
 
Channel 1
Source name Blank_4h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name R80A_4h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 51478
Flp-In TREx 293 cells stably transfected with R80A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 4 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.1p13-061803
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 4
SAMPLE: R80A_4h:Blank_4h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.995 0.502 1 1 1 448 157 122 153 886 180 183 64 0 -0.995
1174364_1 -0.130 0.914 1 1 2 3390 1205 121 158 4060 1028 187 66 0 -0.130
1175152_1 -0.983 0.506 1 1 3 315 143 114 67 603 144 173 53 0 -0.983
1175940_1 0.032 1.023 1 1 4 2531 692 119 77 2724 603 171 52 0 0.032
1176716_1 0.031 1.022 1 1 5 4525 1063 129 88 4838 922 181 61 0 0.031
1177504_1 0.259 1.197 1 1 6 3392 1435 127 77 3140 1240 187 61 0 0.259
1178580_1 0.348 1.273 1 1 7 3811 1576 126 64 3316 1473 182 50 0 0.348
1179356_1 -1.385 0.383 1 1 8 240 102 130 77 496 144 185 64 0 -1.385
1180144_1 0.138 1.101 1 1 9 4025 1095 124 72 4020 934 184 64 0 0.138
1180932_1 -0.890 0.540 1 1 10 298 117 123 227 532 133 181 147 0 -0.890
1181708_1 0.281 1.215 1 1 11 1458 755 120 216 1372 418 180 139 0 0.281
1182496_1 -1.800 0.287 1 1 12 189 73 124 63 420 111 175 50 0 -1.800
1183572_1 0.541 1 1 13 122 52 122 58 181 52 179 51 -50 -0.886
1184348_1 -0.410 0.753 1 1 14 407 154 124 60 591 199 184 48 0 -0.410
1185136_1 -0.502 0.706 1 1 15 479 176 141 67 697 304 179 57 0 -0.502
1185924_1 -0.594 0.662 1 1 16 294 138 122 56 454 106 173 49 0 -0.594
1186700_1 0.595 1.511 1 1 17 2387 676 124 61 1796 464 175 49 0 0.595
1187488_1 -0.132 0.913 1 1 18 819 417 125 76 994 453 171 49 0 -0.132
1188564_1 1.804 1 1 19 130 70 120 71 177 51 171 53 -50 0.851
1189340_1 -0.119 0.921 1 1 20 657 266 127 78 799 278 176 110 0 -0.119

Total number of rows: 21794

Table truncated, full table size 1495 Kbytes.




Supplementary data files not provided

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