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Sample GSM41905 Query DataSets for GSM41905
Status Public on Feb 10, 2006
Title WT_12h:Blank_12h - mAdb ID 49525
Sample type RNA
 
Channel 1
Source name Blank_12h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name WT_12h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 49525
Flp-In TREx 293 cells stably transfected with wild type-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 12 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.1p13-061803
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 12
SAMPLE: WT_12h:Blank_12h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -1.179 0.442 1 1 1 424 127 104 45 981 174 147 39 0 -1.179
1174364_1 -0.066 0.955 1 1 2 1477 527 106 61 1801 471 149 48 0 -0.066
1175152_1 -0.655 0.635 1 1 3 314 158 111 54 526 147 158 43 0 -0.655
1175940_1 -0.528 0.693 1 1 4 375 114 125 82 568 114 153 132 0 -0.528
1176716_1 -0.089 0.940 1 1 5 1478 664 120 51 1820 649 157 40 0 -0.089
1177504_1 0.043 1.030 1 1 6 748 194 118 56 856 126 152 40 0 0.043
1178580_1 -0.119 0.921 1 1 7 1814 405 112 97 2281 414 153 42 0 -0.119
1179356_1 -1.578 0.335 1 1 8 180 68 116 68 378 61 158 36 0 -1.578
1180144_1 -0.105 0.929 1 1 9 712 289 112 55 897 228 154 45 0 -0.105
1180932_1 -1.269 0.415 1 1 10 190 62 115 92 367 88 159 43 0 -1.269
1181708_1 -1.011 0.496 1 1 11 239 100 117 67 439 127 156 40 0 -1.011
1182496_1 -1.729 0.302 1 1 12 166 63 117 58 340 61 153 118 0 -1.729
1183572_1 0.354 1 1 13 120 57 116 62 162 40 149 130 -50 -1.498
1184348_1 -0.431 0.742 1 1 14 274 116 118 71 389 103 147 50 0 -0.431
1185136_1 -0.808 0.571 1 1 15 322 72 133 56 525 119 144 35 0 -0.808
1185924_1 -1.037 0.487 1 1 16 223 99 129 62 372 96 150 49 0 -1.037
1186700_1 -0.110 0.927 1 1 17 845 348 113 53 1082 301 173 79 0 -0.110
1187488_1 -0.576 0.671 1 1 18 304 119 128 53 472 118 170 86 0 -0.576
1188564_1 0.144 1 1 19 123 48 122 56 167 51 159 56 -50 -2.797
1189340_1 -0.531 0.692 1 1 20 378 169 117 73 593 175 159 46 0 -0.531

Total number of rows: 21794

Table truncated, full table size 1474 Kbytes.




Supplementary data files not provided
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