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Sample GSM41908 Query DataSets for GSM41908
Status Public on Feb 10, 2006
Title WT_16h:Blank_16h - mAdb ID 49526
Sample type RNA
 
Channel 1
Source name Blank_16h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name WT_16h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 49526
Flp-In TREx 293 cells stably transfected with wild type-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 16 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.1p13-061803
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 16
SAMPLE: WT_16h:Blank_16h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.330 0.796 1 1 1 1267 296 448 199 1761 310 394 110 0 -0.330
1174364_1 0.322 1.250 1 1 2 4665 1062 481 285 4870 908 425 114 0 0.322
1175152_1 -0.095 0.936 1 1 3 1137 331 448 205 1399 236 422 111 0 -0.095
1175940_1 0.315 1.244 1 1 4 2525 500 452 214 2612 435 399 107 0 0.315
1176716_1 0.614 1.531 1 1 5 8710 1211 565 308 7522 819 457 742 0 0.614
1177504_1 1.051 2.072 1 1 6 7832 934 590 252 5089 632 449 135 0 1.051
1178580_1 0.131 1.095 1 1 7 6713 1577 533 259 7898 1626 404 223 0 0.131
1179356_1 -0.436 0.739 1 1 8 853 270 617 270 868 200 444 188 0 -0.436
1180144_1 0.693 1.616 1 1 9 6440 1257 590 263 5205 796 399 113 0 0.693
1180932_1 -0.419 0.748 1 1 10 908 302 615 447 926 236 406 168 0 -0.419
1181708_1 -0.159 0.896 1 1 11 1341 355 589 436 1513 350 398 216 0 -0.159
1182496_1 -0.089 0.940 1 1 12 885 227 645 243 799 120 460 205 0 -0.089
1183572_1 1.854 1 1 13 702 319 628 242 430 132 377 115 -50 0.891
1184348_1 -0.126 0.916 1 1 14 1157 378 665 270 1097 263 384 117 0 -0.126
1185136_1 0.472 1.387 1 1 15 1379 411 532 191 1220 286 409 146 0 0.472
1185924_1 -0.203 0.869 1 1 16 1005 281 687 332 894 173 408 250 0 -0.203
1186700_1 0.429 1.346 1 1 17 2849 576 657 270 2553 468 391 95 0 0.429
1187488_1 -0.283 0.822 1 1 18 1101 340 661 262 1109 208 398 180 0 -0.283
1188564_1 11.950 1 1 19 710 256 692 259 411 112 409 135 -50 3.579
1189340_1 -0.483 0.715 1 1 20 1135 353 718 362 1167 320 393 148 0 -0.483

Total number of rows: 21794

Table truncated, full table size 1515 Kbytes.




Supplementary data files not provided
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