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Sample GSM41913 Query DataSets for GSM41913
Status Public on Feb 10, 2006
Title F72A/R73A_6h:Blank_6h - mAdb ID 51541
Sample type RNA
 
Channel 1
Source name Blank_6h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_6h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 51541
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 6 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p19-110403
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 6
SAMPLE: F72A/R73A_6h:Blank_6h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.449 0.733 1 1 1 1950 618 172 117 2499 683 278 96 0 -0.449
1174364_1 0.035 1.024 1 1 2 12174 3258 161 125 11024 2588 289 112 0 0.035
1175152_1 -0.185 0.880 1 1 3 1432 730 170 123 1607 750 294 107 0 -0.185
1175940_1 0.131 1.095 1 1 4 2335 908 173 129 2099 785 292 102 0 0.131
1176716_1 -0.074 0.950 1 1 5 7714 1999 187 133 7539 1696 288 106 0 -0.074
1177504_1 0.373 1.295 1 1 6 3702 998 190 130 2763 700 280 108 0 0.373
1178580_1 -0.168 0.890 1 1 7 5031 2250 174 129 5277 2357 281 102 0 -0.168
1179356_1 -0.086 0.942 1 1 8 558 324 175 1328 660 257 288 1154 0 -0.086
1180144_1 0.137 1.099 1 1 9 5347 1665 178 1143 4598 1541 294 992 0 0.137
1180932_1 0.377 1.299 1 1 10 652 431 178 109 617 262 283 112 0 0.377
1181708_1 0.284 1.218 1 1 11 1682 688 181 108 1406 655 278 109 0 0.284
1182496_1 -0.035 0.976 1 1 12 966 522 165 106 1038 463 287 103 0 -0.035
1183572_1 0.114 1.082 1 1 13 3090 1035 178 119 2748 1025 285 109 0 0.114
1184348_1 0.254 1.193 1 1 14 1031 712 175 137 945 424 288 110 0 0.254
1185136_1 1.659 1 1 15 226 143 168 135 309 127 277 97 -50 0.730
1185924_1 -0.113 0.924 1 1 16 587 449 179 143 673 303 269 103 0 -0.113
1186700_1 -0.124 0.918 1 1 17 2041 980 180 158 2135 798 279 100 0 -0.124
1187488_1 0.027 1.019 1 1 18 930 586 192 169 950 432 287 105 0 0.027
1188564_1 0.166 1.122 1 1 19 5068 1692 191 212 4266 1316 287 102 0 0.166
1189340_1 -0.113 0.925 1 1 20 1790 900 185 215 1875 826 286 98 0 -0.113

Total number of rows: 21794

Table truncated, full table size 1540 Kbytes.




Supplementary data files not provided
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