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Sample GSM41915 Query DataSets for GSM41915
Status Public on Feb 10, 2006
Title R80A_12h:Blank_12h - mAdb ID 51481
Sample type RNA
 
Channel 1
Source name Blank_12h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name R80A_12h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 51481
Flp-In TREx 293 cells stably transfected with R80A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 12 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.1p13-061803
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 12
SAMPLE: R80A_12h:Blank_12h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.726 0.605 1 1 1 881 202 229 117 1806 357 325 106 0 -0.726
1174364_1 0.511 1.425 1 1 2 4320 1487 228 112 4270 1157 326 100 0 0.511
1175152_1 -0.500 0.707 1 1 3 642 249 225 116 1148 239 338 94 0 -0.500
1175940_1 0.323 1.251 1 1 4 3359 712 224 113 3774 775 332 99 0 0.323
1176716_1 0.180 1.133 1 1 5 6975 2610 231 130 8508 3081 335 107 0 0.180
1177504_1 0.742 1.673 1 1 6 7450 1390 245 124 6245 949 331 106 0 0.742
1178580_1 0.569 1.484 1 1 7 6052 1829 245 166 5699 1332 325 130 0 0.569
1179356_1 -0.646 0.639 1 1 8 569 268 245 138 1019 215 323 125 0 -0.646
1180144_1 0.384 1.305 1 1 9 8957 2376 241 141 9511 2350 340 115 0 0.384
1180932_1 -0.161 0.895 1 1 10 655 273 227 143 993 232 336 104 0 -0.161
1181708_1 0.403 1.322 1 1 11 2133 693 227 157 2312 641 332 116 0 0.403
1182496_1 -0.637 0.643 1 1 12 447 168 240 172 776 174 334 121 0 -0.637
1183572_1 0.845 1 1 13 265 150 249 155 352 125 326 127 -50 -0.243
1184348_1 0.020 1.014 1 1 14 976 402 236 141 1314 465 312 98 0 0.020
1185136_1 0.381 1.302 1 1 15 1715 893 241 178 1849 879 295 105 0 0.381
1185924_1 -0.133 0.912 1 1 16 546 219 224 146 787 198 302 99 0 -0.133
1186700_1 0.999 1.999 1 1 17 5623 1309 230 122 4018 861 314 105 0 0.999
1187488_1 0.314 1.244 1 1 18 1710 615 232 135 1943 619 311 98 0 0.314
1188564_1 0.026 1 1 19 229 127 230 113 358 112 305 103 -50 -5.270
1189340_1 -0.318 0.802 1 1 20 813 332 217 113 1330 394 310 103 0 -0.318

Total number of rows: 21794

Table truncated, full table size 1525 Kbytes.




Supplementary data files not provided
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