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Sample GSM41923 Query DataSets for GSM41923
Status Public on Feb 10, 2006
Title WT_4h:Blank_4h - mAdb ID 50999
Sample type RNA
 
Channel 1
Source name Blank_4h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name WT_4h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 50999
Flp-In TREx 293 cells stably transfected with wild type-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 4 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.1p13-061803
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 4
SAMPLE: WT_4h:Blank_4h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.335 0.793 1 1 1 1391 396 254 119 2300 389 356 109 0 -0.335
1174364_1 0.380 1.302 1 1 2 4061 963 252 137 4330 690 363 95 0 0.380
1175152_1 -0.548 0.684 1 1 3 795 287 250 130 1438 332 358 89 0 -0.548
1175940_1 0.052 1.037 1 1 4 1207 402 260 141 1599 343 361 121 0 0.052
1176716_1 0.679 1.601 1 1 5 5712 1273 272 237 4948 964 341 278 0 0.679
1177504_1 0.926 1.900 1 1 6 3951 752 262 250 2967 516 335 276 0 0.926
1178580_1 0.383 1.304 1 1 7 8713 3673 256 146 9140 3789 346 97 0 0.383
1179356_1 -0.778 0.583 1 1 8 552 208 266 134 1025 195 360 100 0 -0.778
1180144_1 0.640 1.559 1 1 9 4133 1226 278 142 3717 750 364 101 0 0.640
1180932_1 -0.979 0.507 1 1 10 524 217 268 171 1039 212 355 98 0 -0.979
1181708_1 -0.198 0.872 1 1 11 1000 460 272 184 1488 430 356 98 0 -0.198
1182496_1 -0.877 0.544 1 1 12 418 207 259 137 739 238 343 91 0 -0.877
1183572_1 0.411 1 1 13 271 132 251 132 406 271 340 92 -50 -1.283
1184348_1 0.088 1.063 1 1 14 868 399 259 127 1120 254 343 91 0 0.088
1185136_1 -0.032 0.978 1 1 15 1238 776 245 143 1722 878 346 97 0 -0.032
1185924_1 -0.416 0.750 1 1 16 584 254 255 136 922 191 327 102 0 -0.416
1186700_1 0.366 1.289 1 1 17 1764 508 260 127 1911 406 329 112 0 0.366
1187488_1 -0.155 0.898 1 1 18 961 420 258 122 1397 331 336 101 0 -0.155
1188564_1 25.757 1 1 19 279 124 260 134 343 88 351 97 -50 4.687
1189340_1 -0.122 0.919 1 1 20 969 395 270 143 1372 366 341 97 0 -0.122

Total number of rows: 21794

Table truncated, full table size 1534 Kbytes.




Supplementary data files not provided
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