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Sample GSM41924 Query DataSets for GSM41924
Status Public on Feb 10, 2006
Title F72A/R73A_12h:Blank_12h - mAdb ID 51543
Sample type RNA
 
Channel 1
Source name Blank_12h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_12h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 51543
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 12 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p19-110403
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 12
SAMPLE: F72A/R73A_12h:Blank_12h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.417 0.749 1 1 1 1235 555 276 175 1498 585 330 157 0 -0.417
1174364_1 0.318 1.246 1 1 2 9175 2111 262 172 6854 1758 332 138 0 0.318
1175152_1 -0.242 0.846 1 1 3 1161 517 280 176 1285 641 335 127 0 -0.242
1175940_1 0.089 1.064 1 1 4 1380 502 272 186 1307 566 357 152 0 0.089
1176716_1 -0.164 0.892 1 1 5 4338 1518 251 169 4530 1337 353 147 0 -0.164
1177504_1 0.407 1.325 1 1 6 1451 500 265 151 1148 388 332 123 0 0.407
1178580_1 0.218 1.163 1 1 7 1478 808 260 157 1289 656 334 139 0 0.218
1179356_1 0.207 1.155 1 1 8 656 354 261 173 642 337 330 129 0 0.207
1180144_1 -0.158 0.896 1 1 9 2162 730 275 175 2259 824 339 204 0 -0.158
1180932_1 0.114 1.082 1 1 10 588 341 276 185 588 324 325 196 0 0.114
1181708_1 0.314 1.243 1 1 11 844 407 270 169 747 358 326 137 0 0.314
1182496_1 0.116 1.083 1 1 12 875 357 281 157 847 386 347 129 0 0.116
1183572_1 0.218 1.163 1 1 13 2972 899 285 189 2438 720 331 129 0 0.218
1184348_1 0.195 1.145 1 1 14 759 378 277 169 706 447 322 129 0 0.195
1185136_1 0.127 1 1 15 282 166 277 145 371 174 335 136 -50 -2.981
1185924_1 -0.419 0.748 1 1 16 565 306 269 163 700 423 339 143 0 -0.419
1186700_1 -0.131 0.913 1 1 17 1006 591 273 174 1072 497 340 191 0 -0.131
1187488_1 -0.068 0.954 1 1 18 684 386 277 160 734 387 345 153 0 -0.068
1188564_1 0.140 1.102 1 1 19 1885 901 282 180 1666 761 339 158 0 0.140
1189340_1 0.026 1.018 1 1 20 1558 770 276 182 1482 835 334 137 0 0.026

Total number of rows: 21794

Table truncated, full table size 1530 Kbytes.




Supplementary data files not provided
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