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Sample GSM41926 Query DataSets for GSM41926
Status Public on Feb 10, 2006
Title F72A/R73A_12h:Blank_12h - mAdb ID 54949
Sample type RNA
 
Channel 1
Source name Blank_12h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_12h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 54949
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 12 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p26-012004
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 12
SAMPLE: F72A/R73A_12h:Blank_12h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.693 0.619 1 1 1 1017 497 156 106 1660 621 187 127 0 -0.693
1174364_1 0.177 1.131 1 1 2 4391 1675 172 183 4131 1623 182 260 0 0.177
1175152_1 -0.151 0.901 1 1 3 726 423 166 185 852 532 194 268 0 -0.151
1175940_1 0.210 1.157 1 1 4 871 515 166 151 842 388 197 112 0 0.210
1176716_1 -0.119 0.921 1 1 5 3511 1465 178 274 4034 1424 203 459 0 -0.119
1177504_1 0.641 1.559 1 1 6 1247 533 179 271 929 337 204 456 0 0.641
1178580_1 0.308 1.238 1 1 7 3592 1369 169 144 3119 1317 193 261 0 0.308
1179356_1 0.463 1.378 1 1 8 428 296 161 146 399 205 194 239 0 0.463
1180144_1 -0.018 0.988 1 1 9 1999 890 166 121 2160 812 196 92 0 -0.018
1180932_1 -0.517 0.699 1 1 10 385 212 183 188 506 280 200 134 0 -0.517
1181708_1 0.299 1.230 1 1 11 751 485 157 171 700 386 189 115 0 0.299
1182496_1 -0.178 0.884 1 1 12 319 157 167 123 368 165 186 104 0 -0.178
1183572_1 -0.007 0.995 1 1 13 2082 733 168 121 2230 646 195 90 0 -0.007
1184348_1 -0.025 0.983 1 1 14 522 443 169 116 578 359 198 91 0 -0.025
1185136_1 0.670 1.591 1 1 15 423 353 172 121 360 202 193 86 0 0.670
1185924_1 -0.329 0.796 1 1 16 423 293 174 132 527 290 196 98 0 -0.329
1186700_1 0.221 1.165 1 1 17 835 449 160 118 809 316 196 134 0 0.221
1187488_1 -0.206 0.867 1 1 18 588 405 158 161 720 475 195 158 0 -0.206
1188564_1 0.233 1.175 1 1 19 2127 1020 170 138 1957 894 195 131 0 0.233
1189340_1 0.187 1.138 1 1 20 1001 631 173 189 963 432 193 165 0 0.187

Total number of rows: 21794

Table truncated, full table size 1511 Kbytes.




Supplementary data files not provided
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