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Sample GSM41928 Query DataSets for GSM41928
Status Public on Feb 10, 2006
Title F72A/R73A_16h:Blank_16h - mAdb ID 51544
Sample type RNA
 
Channel 1
Source name Blank_16h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_16h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 51544
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 16 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p19-110403
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 16
SAMPLE: F72A/R73A_16h:Blank_16h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.076 0.949 1 1 1 1032 271 163 108 1215 385 336 135 0 -0.076
1174364_1 0.051 1.036 1 1 2 7180 2262 161 103 6844 1908 341 127 0 0.051
1175152_1 -0.594 0.663 1 1 3 931 467 159 90 1452 639 334 132 0 -0.594
1175940_1 0.709 1.635 1 1 4 2678 845 158 89 1818 618 339 125 0 0.709
1176716_1 -0.451 0.731 1 1 5 8755 2280 152 90 11639 3987 351 191 0 -0.451
1177504_1 1.346 2.542 1 1 6 6465 1727 153 89 2727 875 344 203 0 1.346
1178580_1 -0.188 0.878 1 1 7 4984 1889 158 92 5623 2289 346 111 0 -0.188
1179356_1 -0.646 0.639 1 1 8 414 197 163 101 722 323 345 117 0 -0.646
1180144_1 0.444 1.360 1 1 9 10265 3457 159 107 7468 2872 339 133 0 0.444
1180932_1 0.247 1.187 1 1 10 685 360 157 98 756 371 329 117 0 0.247
1181708_1 -0.453 0.731 1 1 11 2096 761 165 97 2874 1175 338 126 0 -0.453
1182496_1 0.514 1.428 1 1 12 710 401 167 96 699 236 334 122 0 0.514
1183572_1 0.109 1.078 1 1 13 1575 587 168 93 1592 705 340 122 0 0.109
1184348_1 0.131 1.095 1 1 14 1097 499 168 98 1149 539 335 118 0 0.131
1185136_1 2.292 1 1 15 236 148 150 109 371 131 335 126 -50 1.197
1185924_1 -0.384 0.766 1 1 16 395 169 169 135 623 271 340 126 0 -0.384
1186700_1 -0.087 0.942 1 1 17 4327 1326 167 126 4591 1642 352 116 0 -0.087
1187488_1 0.608 1.525 1 1 18 1557 596 170 125 1229 594 356 139 0 0.608
1188564_1 0.631 1.549 1 1 19 14423 4879 180 122 9172 3225 348 144 0 0.631
1189340_1 -0.289 0.818 1 1 20 1145 668 178 191 1485 641 351 186 0 -0.289

Total number of rows: 21794

Table truncated, full table size 1526 Kbytes.




Supplementary data files not provided
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