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Sample GSM41930 Query DataSets for GSM41930
Status Public on Feb 10, 2006
Title F72A/R73A_16h:Blank_16h - mAdb ID 54950
Sample type RNA
 
Channel 1
Source name Blank_16h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_16h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 54950
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 16 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p26-012004
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 16
SAMPLE: F72A/R73A_16h:Blank_16h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.935 0.523 1 1 1 425 201 76 41 772 219 80 31 0 -0.935
1174364_1 -0.083 0.944 1 1 2 1304 453 76 43 1427 565 78 31 0 -0.083
1175152_1 -0.383 0.767 1 1 3 234 154 72 45 298 145 79 32 0 -0.383
1175940_1 -0.200 0.871 1 1 4 504 167 74 44 593 202 81 36 0 -0.200
1176716_1 -0.032 0.978 1 1 5 1923 402 76 38 2038 441 80 37 0 -0.032
1177504_1 0.465 1.380 1 1 6 1582 360 75 139 1217 274 85 49 0 0.465
1178580_1 -0.388 0.764 1 1 7 1969 586 72 132 2656 813 82 48 0 -0.388
1179356_1 -0.467 0.724 1 1 8 141 73 74 42 179 78 83 34 0 -0.467
1180144_1 0.067 1.048 1 1 9 1712 521 75 41 1703 472 83 32 0 0.067
1180932_1 -0.090 0.940 1 1 10 190 113 74 37 212 138 84 39 0 -0.090
1181708_1 -0.051 0.965 1 1 11 478 289 73 38 520 257 85 37 0 -0.051
1182496_1 0.052 1.037 1 1 12 192 115 70 45 205 93 83 32 0 0.052
1183572_1 0.047 1.033 1 1 13 633 258 71 41 647 216 83 36 0 0.047
1184348_1 0.275 1.210 1 1 14 313 192 75 45 286 125 82 36 0 0.275
1185136_1 -0.341 0.790 1 1 15 180 145 81 47 212 147 82 30 0 -0.341
1185924_1 -0.640 0.642 1 1 16 162 80 76 49 222 125 83 34 0 -0.640
1186700_1 0.182 1.134 1 1 17 804 318 69 35 755 275 83 37 0 0.182
1187488_1 0.160 1.118 1 1 18 447 241 73 48 435 184 88 48 0 0.160
1188564_1 0.121 1.088 1 1 19 3077 800 75 46 2948 685 86 44 0 0.121
1189340_1 0.267 1.203 1 1 20 457 199 73 37 412 193 81 36 0 0.267

Total number of rows: 21794

Table truncated, full table size 1436 Kbytes.




Supplementary data files not provided
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