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Sample GSM41934 Query DataSets for GSM41934
Status Public on Feb 10, 2006
Title F72A/R73A_24h:Blank_24h - mAdb ID 54951
Sample type RNA
 
Channel 1
Source name Blank_24h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name F72A/R73A_24h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 54951
Flp-In TREx 293 cells stably transfected with F72A/R73A-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 24 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p26-012004
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 24
SAMPLE: F72A/R73A_24h:Blank_24h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.657 0.634 1 1 1 507 213 137 91 755 390 144 73 0 -0.657
1174364_1 0.009 1.006 1 1 2 2394 689 136 87 2490 801 140 78 0 0.009
1175152_1 -0.546 0.685 1 1 3 318 227 142 87 411 257 142 68 0 -0.546
1175940_1 0.019 1.013 1 1 4 1454 421 139 87 1500 444 141 63 0 0.019
1176716_1 0.065 1.046 1 1 5 3224 790 136 89 3234 698 144 68 0 0.065
1177504_1 0.363 1.286 1 1 6 2607 521 137 95 2162 505 151 120 0 0.363
1178580_1 -0.186 0.879 1 1 7 4250 1417 148 88 5031 1640 146 112 0 -0.186
1179356_1 -0.175 0.886 1 1 8 259 133 138 83 285 96 142 60 0 -0.175
1180144_1 -0.262 0.834 1 1 9 2372 729 141 75 2944 995 143 65 0 -0.262
1180932_1 -0.491 0.711 1 1 10 338 217 143 78 423 260 136 64 0 -0.491
1181708_1 -0.028 0.981 1 1 11 571 286 141 86 597 368 138 70 0 -0.028
1182496_1 -0.465 0.724 1 1 12 230 128 138 86 272 119 139 63 0 -0.465
1183572_1 0.415 1.333 1 1 13 1040 350 145 85 848 320 145 61 0 0.415
1184348_1 0.042 1.030 1 1 14 321 213 144 85 325 165 145 66 0 0.042
1185136_1 0.616 1.533 1 1 15 489 239 167 126 380 252 160 79 0 0.616
1185924_1 -0.258 0.836 1 1 16 285 169 146 84 318 151 144 65 0 -0.258
1186700_1 0.336 1.262 1 1 17 1473 489 140 81 1246 497 140 66 0 0.336
1187488_1 0.191 1.142 1 1 18 817 393 142 82 762 332 143 67 0 0.191
1188564_1 -0.130 0.914 1 1 19 4243 1229 138 88 4847 1357 142 62 0 -0.130
1189340_1 -0.153 0.899 1 1 20 536 221 135 87 604 266 137 62 0 -0.153

Total number of rows: 21794

Table truncated, full table size 1490 Kbytes.




Supplementary data files not provided
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