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Sample GSM41936 Query DataSets for GSM41936
Status Public on Feb 10, 2006
Title WT_1h:Blank_1h - mAdb ID 54146
Sample type RNA
 
Channel 1
Source name Blank_1h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name WT_1h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 54146
Flp-In TREx 293 cells stably transfected with wild type-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 1 hr of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p26-012004
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 1
SAMPLE: WT_1h:Blank_1h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -1.052 0.482 1 1 1 480 198 132 73 894 229 200 56 0 -1.052
1174364_1 -0.014 0.990 1 1 2 2093 777 135 75 2102 642 200 54 0 -0.014
1175152_1 -0.042 0.972 1 1 3 427 218 134 75 499 180 209 53 0 -0.042
1175940_1 0.228 1.171 1 1 4 669 260 132 78 648 196 207 59 0 0.228
1176716_1 0.012 1.009 1 1 5 2367 674 134 77 2330 691 201 54 0 0.012
1177504_1 0.701 1.625 1 1 6 720 220 137 73 543 144 198 55 0 0.701
1178580_1 -0.218 0.860 1 1 7 1483 677 136 80 1707 817 200 56 0 -0.218
1179356_1 1.282 1 1 8 220 104 128 69 266 92 197 54 -50 0.359
1180144_1 0.051 1.036 1 1 9 908 307 129 73 917 268 194 52 0 0.051
1180932_1 -0.382 0.768 1 1 10 321 139 151 124 415 129 202 51 0 -0.382
1181708_1 0.180 1.133 1 1 11 327 131 168 105 331 115 196 55 0 0.180
1182496_1 -0.842 0.558 1 1 12 229 123 171 102 308 105 208 64 0 -0.842
1183572_1 0.150 1.110 1 1 13 891 257 142 73 844 206 195 57 0 0.150
1184348_1 0.944 1.923 1 1 14 360 155 130 58 311 98 196 54 0 0.944
1185136_1 0.097 1.070 1 1 15 242 152 133 62 298 131 200 52 0 0.097
1185924_1 0.244 1.184 1 1 16 302 133 137 73 325 112 191 49 0 0.244
1186700_1 -0.225 0.856 1 1 17 531 195 136 78 634 184 190 52 0 -0.225
1187488_1 -0.336 0.792 1 1 18 259 105 128 66 354 115 195 70 0 -0.336
1188564_1 0.431 1.348 1 1 19 910 331 128 76 754 201 196 52 0 0.431
1189340_1 -0.317 0.803 1 1 20 684 226 123 72 866 286 194 48 0 -0.317

Total number of rows: 21794

Table truncated, full table size 1479 Kbytes.




Supplementary data files not provided
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