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Sample GSM41940 Query DataSets for GSM41940
Status Public on Feb 10, 2006
Title WT_8h:Blank_8h - mAdb ID 54151
Sample type RNA
 
Channel 1
Source name Blank_8h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name WT_8h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 54151
Flp-In TREx 293 cells stably transfected with wild type-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 8 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p26-012004
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 8
SAMPLE: WT_8h:Blank_8h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.398 0.759 1 1 1 974 409 145 128 1316 459 141 86 0 -0.398
1174364_1 0.127 1.092 1 1 2 4729 1233 149 131 4649 972 136 79 0 0.127
1175152_1 -0.199 0.871 1 1 3 872 398 148 106 1029 444 135 85 0 -0.199
1175940_1 0.327 1.255 1 1 4 2128 612 141 113 1843 497 139 87 0 0.327
1176716_1 0.588 1.503 1 1 5 14673 2692 148 108 10545 1724 147 77 0 0.588
1177504_1 0.769 1.704 1 1 6 3928 1072 152 162 2527 700 143 165 0 0.769
1178580_1 0.292 1.224 1 1 7 11094 3887 159 188 9744 3645 134 327 0 0.292
1179356_1 -0.181 0.882 1 1 8 318 146 145 152 350 164 139 309 0 -0.181
1180144_1 0.706 1.631 1 1 9 6959 1677 130 93 4641 1209 137 74 0 0.706
1180932_1 -0.232 0.851 1 1 10 646 271 134 92 778 337 131 84 0 -0.232
1181708_1 -0.270 0.829 1 1 11 916 509 133 98 1143 351 127 76 0 -0.270
1182496_1 -2.170 0.222 1 1 12 209 131 139 111 472 227 133 71 0 -2.170
1183572_1 0.312 1.241 1 1 13 1986 753 138 106 1734 562 132 64 0 0.312
1184348_1 0.068 1.048 1 1 14 594 235 139 88 595 198 128 65 0 0.068
1185136_1 0.580 1.494 1 1 15 441 272 141 96 344 208 128 62 0 0.580
1185924_1 0.005 1.004 1 1 16 514 236 125 84 548 209 131 65 0 0.005
1186700_1 0.386 1.307 1 1 17 2794 828 134 89 2316 792 126 105 0 0.386
1187488_1 -0.233 0.851 1 1 18 797 292 135 86 961 274 124 110 0 -0.233
1188564_1 0.908 1.876 1 1 19 9363 2676 127 88 5427 1765 130 71 0 0.908
1189340_1 -0.163 0.893 1 1 20 1487 703 121 88 1774 775 128 69 0 -0.163

Total number of rows: 21794

Table truncated, full table size 1494 Kbytes.




Supplementary data files not provided
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