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Sample GSM41941 Query DataSets for GSM41941
Status Public on Feb 10, 2006
Title WT_12h:Blank_12h - mAdb ID 54153
Sample type RNA
 
Channel 1
Source name Blank_12h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name WT_12h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 54153
Flp-In TREx 293 cells stably transfected with wild type-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 12 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p26-012004
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 12
SAMPLE: WT_12h:Blank_12h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.428 0.743 1 1 1 313 142 80 51 418 167 83 50 0 -0.428
1174364_1 0.302 1.233 1 1 2 1885 514 80 49 1651 376 86 49 0 0.302
1175152_1 -0.139 0.908 1 1 3 331 178 77 47 385 207 86 33 0 -0.139
1175940_1 0.082 1.059 1 1 4 494 179 76 46 508 192 86 47 0 0.082
1176716_1 0.493 1.407 1 1 5 3284 1467 71 43 2527 1225 86 46 0 0.493
1177504_1 0.811 1.755 1 1 6 1086 376 78 45 702 261 88 38 0 0.811
1178580_1 0.033 1.023 1 1 7 3742 1632 85 47 3912 1299 91 38 0 0.033
1179356_1 0.234 1.176 1 1 8 181 98 82 44 181 102 91 33 0 0.234
1180144_1 0.694 1.618 1 1 9 2734 1008 81 43 1840 613 87 31 0 0.694
1180932_1 -0.481 0.717 1 1 10 256 110 73 46 359 128 86 35 0 -0.481
1181708_1 0.284 1.218 1 1 11 502 192 77 38 459 160 86 34 0 0.284
1182496_1 -1.274 0.414 1 1 12 130 46 77 40 225 73 88 32 0 -1.274
1183572_1 0.208 1.155 1 1 13 754 316 72 41 722 259 91 29 0 0.208
1184348_1 0.213 1.159 1 1 14 296 132 77 66 288 124 86 33 0 0.213
1185136_1 -0.313 0.805 1 1 15 261 134 84 84 330 165 95 60 0 -0.313
1185924_1 -0.402 0.757 1 1 16 227 86 79 59 296 127 87 39 0 -0.402
1186700_1 0.257 1.195 1 1 17 1020 366 80 48 929 435 88 70 0 0.257
1187488_1 -0.568 0.674 1 1 18 307 125 83 47 445 186 90 31 0 -0.568
1188564_1 0.848 1.800 1 1 19 3703 1409 82 45 2236 833 86 31 0 0.848
1189340_1 -0.382 0.768 1 1 20 678 381 77 41 921 502 84 31 0 -0.382

Total number of rows: 21794

Table truncated, full table size 1443 Kbytes.




Supplementary data files not provided
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