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Sample GSM41945 Query DataSets for GSM41945
Status Public on Feb 10, 2006
Title WT_16h:Blank_16h - mAdb ID 54161
Sample type RNA
 
Channel 1
Source name Blank_16h
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name WT_16h
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 54161
Flp-In TREx 293 cells stably transfected with wild type-Vpr versus Flp-In TREx 293 cells stably transfected with blank vector harvested after 16 hrs of doxycycline treatment
Array Print: Hs-OperonV2-vB1.2p26-012004
cell_type: human embryonic kidney
cell_line: 293
Doxycycline treatment: 1 microgram/ml
treatment_time (hrs): 16
SAMPLE: WT_16h:Blank_16h
 
Submission date Feb 10, 2005
Last update date Apr 03, 2006
Contact name Naoto Yoshizuka
E-mail(s) yoshizun@mail.nih.gov
Phone 301-402-3624
Organization name NCI
Street address
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE2296 Effects of inducible HIV-1 Vpr protein on cellular gene expression

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE same as UNF_VALUE but with flagged values removed
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad
UNF_VALUE log ratio (log2 of PRE_VALUE)

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag UNF_VALUE
1173588_1 -0.427 0.744 1 1 1 932 319 351 320 1144 350 220 122 0 -0.427
1174364_1 -0.051 0.965 1 1 2 5941 2010 316 311 7105 1872 212 123 0 -0.051
1175152_1 -0.526 0.695 1 1 3 822 483 288 196 1115 485 206 100 0 -0.526
1175940_1 0.293 1.226 1 1 4 2269 626 301 207 2110 698 211 125 0 0.293
1176716_1 0.360 1.284 1 1 5 14682 2966 308 197 13462 1927 220 104 0 0.360
1177504_1 0.989 1.985 1 1 6 4008 833 322 317 2408 531 212 109 0 0.989
1178580_1 0.366 1.289 1 1 7 10596 4264 309 318 9647 4054 208 153 0 0.366
1179356_1 0.151 1 1 8 316 174 292 200 386 203 198 149 -50 -2.728
1180144_1 0.878 1.838 1 1 9 8936 3130 280 214 5775 1781 206 170 0 0.878
1180932_1 -0.762 0.590 1 1 10 1043 549 279 241 1736 667 204 131 0 -0.762
1181708_1 0.302 1.233 1 1 11 1836 912 295 1257 1676 597 198 424 0 0.302
1182496_1 0.003 1 1 12 282 167 303 1576 553 293 215 543 -50 -8.159
1183572_1 0.388 1.309 1 1 13 2228 717 302 1335 1955 611 215 451 0 0.388
1184348_1 -0.189 0.877 1 1 14 691 311 297 197 731 329 200 108 0 -0.189
1185136_1 0.312 1.241 1 1 15 512 261 300 180 422 262 220 109 0 0.312
1185924_1 -0.977 0.508 1 1 16 618 360 282 172 1000 627 218 106 0 -0.977
1186700_1 0.318 1.247 1 1 17 5082 1770 272 177 4775 1596 213 198 0 0.318
1187488_1 -0.478 0.718 1 1 18 1298 627 265 190 1915 833 213 249 0 -0.478
1188564_1 0.880 1.841 1 1 19 12813 4823 286 211 8253 3240 205 197 0 0.880
1189340_1 -0.809 0.571 1 1 20 1450 540 265 186 2658 897 202 103 0 -0.809

Total number of rows: 21794

Table truncated, full table size 1519 Kbytes.




Supplementary data files not provided
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