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Sample GSM424840 Query DataSets for GSM424840
Status Public on Apr 18, 2011
Title COPD1
Sample type RNA
 
Source name alveolar macrophage
Organism Homo sapiens
Characteristics cell type: alveolar macrophage
disease status: COPD patient
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Kit according to manufacturer's protocol
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description alveolar macrophages isolated from bronchoalveolar lavage fluid
Data processing GeneSpring 7.3 GC-RMA algorithm
 
Submission date Jul 07, 2009
Last update date Sep 01, 2016
Contact name Szilard Poliska
E-mail(s) poliska@dote.hu
Phone +3652416432
Organization name University of Debrecen
Department Biochemistry and Molecular Biology
Lab Nuclear Hormone Receptor Research Laboratory
Street address Egyetem ter 1.
City Debrecen
ZIP/Postal code H-4012
Country Hungary
 
Platform ID GPL96
Series (1)
GSE16972 COPD-Specific Gene Expression Signatures of Alveolar Macrophages as well as Peripheral Blood Monocytes Overlap and Correlate with Lung Function
Relations
Reanalyzed by GSE86363

Data table header descriptions
ID_REF
VALUE GC-RMA (GeneSpring 7.3) normalized signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 284.073 P 0.0464816
AFFX-BioB-M_at 561.216 P 0.0020226
AFFX-BioB-3_at 187.781 P 0.0239288
AFFX-BioC-5_at 591.281 P 0.000340305
AFFX-BioC-3_at 467.688 P 0.00159257
AFFX-BioDn-5_at 555.768 P 0.00255552
AFFX-BioDn-3_at 4669.11 P 0.000753643
AFFX-CreX-5_at 5688.6 P 4.42873e-05
AFFX-CreX-3_at 8282.03 P 4.42873e-05
AFFX-DapX-5_at 18.4273 A 0.239063
AFFX-DapX-M_at 44.9039 A 0.175328
AFFX-DapX-3_at 9.36707 A 0.904333
AFFX-LysX-5_at 8.52019 A 0.672921
AFFX-LysX-M_at 11.2337 A 0.52976
AFFX-LysX-3_at 36.4633 A 0.340661
AFFX-PheX-5_at 3.92266 A 0.957038
AFFX-PheX-M_at 6.29472 A 0.916408
AFFX-PheX-3_at 22.0606 A 0.631562
AFFX-ThrX-5_at 9.95145 A 0.9273
AFFX-ThrX-M_at 15.8125 A 0.699394

Total number of rows: 22283

Table truncated, full table size 667 Kbytes.




Supplementary file Size Download File type/resource
GSM424840.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM424840.CHP.gz 120.5 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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