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Sample GSM424844 Query DataSets for GSM424844
Status Public on Apr 18, 2011
Title control2
Sample type RNA
 
Source name alveolar macrophage
Organism Homo sapiens
Characteristics cell type: alveolar macrophage
disease status: control patient
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Kit according to manufacturer's protocol
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description alveolar macrophages isolated from bronchoalveolar lavage fluid
Data processing GeneSpring 7.3 GC-RMA algorithm
 
Submission date Jul 07, 2009
Last update date Sep 01, 2016
Contact name Szilard Poliska
E-mail(s) poliska@dote.hu
Phone +3652416432
Organization name University of Debrecen
Department Biochemistry and Molecular Biology
Lab Nuclear Hormone Receptor Research Laboratory
Street address Egyetem ter 1.
City Debrecen
ZIP/Postal code H-4012
Country Hungary
 
Platform ID GPL96
Series (1)
GSE16972 COPD-Specific Gene Expression Signatures of Alveolar Macrophages as well as Peripheral Blood Monocytes Overlap and Correlate with Lung Function
Relations
Reanalyzed by GSE86363

Data table header descriptions
ID_REF
VALUE GC-RMA (GeneSpring 7.3) normalized signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 221.28 P 0.026111
AFFX-BioB-M_at 343.124 P 0.00110197
AFFX-BioB-3_at 188.577 P 0.0103167
AFFX-BioC-5_at 598.852 P 0.000258358
AFFX-BioC-3_at 381.402 P 0.000856509
AFFX-BioDn-5_at 524.169 P 0.0012475
AFFX-BioDn-3_at 3375.35 P 0.000509415
AFFX-CreX-5_at 5422.12 P 4.42873e-05
AFFX-CreX-3_at 8798.71 P 4.42873e-05
AFFX-DapX-5_at 10.3811 A 0.574038
AFFX-DapX-M_at 41.9327 A 0.185131
AFFX-DapX-3_at 4.98645 A 0.9273
AFFX-LysX-5_at 31.4284 A 0.147939
AFFX-LysX-M_at 14.7751 A 0.544587
AFFX-LysX-3_at 5.18544 A 0.559354
AFFX-PheX-5_at 4.30669 A 0.883887
AFFX-PheX-M_at 2.52313 A 0.932322
AFFX-PheX-3_at 52.2542 A 0.52976
AFFX-ThrX-5_at 8.48859 A 0.804734
AFFX-ThrX-M_at 22.0976 A 0.5

Total number of rows: 22283

Table truncated, full table size 669 Kbytes.




Supplementary file Size Download File type/resource
GSM424844.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM424844.CHP.gz 120.0 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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