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Sample GSM424853 Query DataSets for GSM424853
Status Public on Apr 18, 2011
Title COPD5
Sample type RNA
 
Source name alveolar macrophage
Organism Homo sapiens
Characteristics cell type: alveolar macrophage
disease status: COPD patient
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy Kit according to manufacturer's protocol
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description alveolar macrophages isolated from bronchoalveolar lavage fluid
Data processing GeneSpring 7.3 GC-RMA algorithm
 
Submission date Jul 07, 2009
Last update date Sep 01, 2016
Contact name Szilard Poliska
E-mail(s) poliska@dote.hu
Phone +3652416432
Organization name University of Debrecen
Department Biochemistry and Molecular Biology
Lab Nuclear Hormone Receptor Research Laboratory
Street address Egyetem ter 1.
City Debrecen
ZIP/Postal code H-4012
Country Hungary
 
Platform ID GPL96
Series (1)
GSE16972 COPD-Specific Gene Expression Signatures of Alveolar Macrophages as well as Peripheral Blood Monocytes Overlap and Correlate with Lung Function
Relations
Reanalyzed by GSE86363

Data table header descriptions
ID_REF
VALUE GC-RMA (GeneSpring 7.3) normalized signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 277.659 M 0.0584438
AFFX-BioB-M_at 399.825 P 0.0012475
AFFX-BioB-3_at 258.621 P 0.0309764
AFFX-BioC-5_at 654.674 P 0.000662269
AFFX-BioC-3_at 474.575 P 0.00359458
AFFX-BioDn-5_at 583.847 P 0.00844047
AFFX-BioDn-3_at 4125.97 P 0.000509415
AFFX-CreX-5_at 5929.27 P 4.42873e-05
AFFX-CreX-3_at 9266.95 P 4.42873e-05
AFFX-DapX-5_at 39.8335 A 0.275146
AFFX-DapX-M_at 51.0783 A 0.227636
AFFX-DapX-3_at 12.0188 A 0.760937
AFFX-LysX-5_at 4.77649 A 0.804734
AFFX-LysX-M_at 16.0191 A 0.631562
AFFX-LysX-3_at 33.0658 A 0.39692
AFFX-PheX-5_at 5.0978 A 0.957038
AFFX-PheX-M_at 3.67282 A 0.941556
AFFX-PheX-3_at 125.663 A 0.470241
AFFX-ThrX-5_at 11.6958 A 0.876428
AFFX-ThrX-M_at 13.3709 A 0.617401

Total number of rows: 22283

Table truncated, full table size 666 Kbytes.




Supplementary file Size Download File type/resource
GSM424853.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM424853.CHP.gz 119.8 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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