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Sample GSM42566 Query DataSets for GSM42566
Status Public on Mar 01, 2005
Title (ratio profile 2 -pol) LATY136F CD4+ alpha beta T cells vs. wildtype CD4+ alpha beta T cells
Sample type RNA
 
Channel 1
Source name LATY136F CD4+ alpha beta T cells
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name wildtype CD4+ alpha beta T cells
Organism Mus musculus
Extracted molecule total RNA
 
 
Description ratio profile (dye-reversal: -polarity)
CD4+ alpha beta T cells were positively sorted (FACSDiva) from wildtype or from LatY136F spleens using MACS and anti-CD4 beads
 
Submission date Feb 17, 2005
Last update date May 27, 2005
Contact name Hans-Joachim Mollenkopf
E-mail(s) mollenkopf@mpiib-berlin.mpg.de
Phone +49 30 28460 482
Organization name Max-Planck-Institute for Infection Biology
Lab Microarray/Genomics Core Facility
Street address Charitéplatz 1
City Berlin
ZIP/Postal code 10117
Country Germany
 
Platform ID GPL1868
Series (2)
GSE2286 (ratio exp) LATY136F CD4+ alpha beta T cells
GSE2289 (dye reversal) wildtype CD4+ alpha beta T cells vs. LATY136F CD4+ alpha beta T cells

Data table header descriptions
ID_REF
Fold Change value representing how many fold a gene is up- or down-regulated relative to the baseline
P-value value describing the confidence that the gene's expression ratio reflects a change in expression
Intensity1 Cy3 absolute intensity measurement after background substraction and normalization
Intensity2 Cy5 absolute intensity measurement after background substraction and normalization
Log(Intensity) log10 of the average of intensity1 and intensity2
Ratio normalized signal intensity2 devided by signal intensity1
VALUE log10 of the expression ratio
Log(Error) error in the log ratio
X Dev difference between the experiment and baseline intensity devided by the standard deviation of the difference
Accession # GenBank accession number
Sequence Name(s) sequence name
Sequence Description sequence description

Data table
ID_REF Fold Change P-value Intensity1 Intensity2 Log(Intensity) Ratio VALUE Log(Error) X Dev Accession # Sequence Name(s) Sequence Description
633390 -10.13911 8.30E-24 2695.15723 265.62393 2.92743 0.09863 -1.006 0.1 -10.06 NM_008042 Fprl1 formyl peptide receptor-like 1
633391 -2.26934 0.00037 18716.07031 8247.86523 4.09428 0.44066 -0.3559 0.1 -3.559 NM_016715 Tslpr "thymic stromal-derived lymphopoietin, receptor"
633392 -1.10813 0.65567 12044.7959 10869.61914 4.05851 0.90242 -0.04459 0.1 -0.4459 AI256499 AI256499 "EST, Weakly similar to 0806162A ATPase 6 [M.musculus]"
633393 -1.19878 1 52314.625 43639.96875 4.67925 0.83418 -0.07874 AI462013 AI462013 "ESTs, Highly similar to HYPOTHETICAL 272.0 KD PROTEIN C50C3.6 IN CHROMOSOME III [Caenorhabditis elegans]"
633394 2.75423 0.01339 52.81068 145.45758 1.94273 2.75423 0.44 0.1779 2.4733 AI662810 AI662810 ESTs
633395 2.26621 0.00115 105.39943 238.83124 2.20046 2.26621 0.3553 0.1093 3.25069 NM_008374 Il9r interleukin 9 receptor
633396 -1.86982 0.01161 220.23233 117.78471 2.20698 0.53481 -0.2718 0.1077 -2.52368 NM_009981 Pcyt1a "phosphate cytidylyltransferase 1, choline, alpha isoform"
633397 1.25751 0.31969 235.72011 296.42004 2.42215 1.25751 0.09951 0.1 0.9951 AI894170 AI894170 "ESTs, Moderately similar to 5-METHYLTETRAHYDROFOLATE--HOMOCYSTEINE METHYLTRANSFERASE [Escherichia coli]"
633398 1.4897 0.08345 64258.60156 95719.77344 4.89447 1.4897 0.1731 0.1 1.731 AW455556 AW455556 "ESTs, Weakly similar to CG11399 gene product [D.melanogaster]"
633399 -17.94733 4.62E-32 18558.01562 1033.68823 3.64146 0.05572 -1.254 0.1064 -11.78571 NM_021443 AB023418 cDNA sequence AB023418
633400 1.30077 0.25345 5951.70264 7741.09521 3.83172 1.30077 0.1142 0.1 1.142 AI451221 AI451221 ESTs
633401 -1.17133 0.49221 811.94312 693.17712 2.87519 0.85373 -0.06868 0.1 -0.6868 AI448098 AI448098 ESTs
633402 1.07547 0.752 670.69794 721.3111 2.84232 1.07547 0.0316 0.1 0.316 BE946070 BE946070 "ESTs, Weakly similar to ORF YKL201c [S.cerevisiae]"
633403 1.01994 0.94098 144.99142 147.88214 2.16563 1.01994 0.00857 0.1158 0.07403 NM_011160 Prkg1 "protein kinase, cGMP-dependent, type I"
633404 -1.27057 0.29834 3914.6958 3080.82251 3.54068 0.78705 -0.104 0.1 -1.04 BF456565 BF456565 "ESTs, Weakly similar to putative membrane associated progesterone receptor component [M.musculus]"
633405 1.10731 0.65798 267.0527 295.71033 2.44873 1.10731 0.04427 0.1 0.4427 NM_008308 Htr1a 5-hydroxytryptamine (serotonin) receptor 1A
633406 1.24403 0.34298 1070.77893 1332.06921 3.07711 1.24403 0.09483 0.1 0.9483 NM_010591 Jun Jun oncogene
633407 -1.64135 0.0314 235.24458 143.30875 2.2639 0.60926 -0.2152 0.1 -2.152 AV254337 AV254337 "EST, Moderately similar to NEK1_MOUSE SERINE/THREONINE-PROTEIN KINASE NEK1 [M.musculus]"
633408 2.34099 0.05766 52.26532 122.35618 1.90292 2.34099 0.3694 0.1946 1.89825 NM_013622 Oprd1 "opioid receptor, delta 1"
633409 -1.35675 0.18517 857.30859 631.83783 2.86687 0.73706 -0.1325 0.1 -1.325 AV374708 AV374708 "ESTs, Highly similar to implantation-associated protein [R.norvegicus]"

Total number of rows: 8014

Table truncated, full table size 1048 Kbytes.




Supplementary file Size Download File type/resource
GSM42566.tif.gz 30.6 Mb (ftp)(http) TIFF

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