NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM42568 Query DataSets for GSM42568
Status Public on Mar 01, 2005
Title (ratio profile 2 -pol) LAT3YF CD5+ gamma delta T cells vs. wildtype CD5+ gamma delta T cells
Sample type RNA
 
Channel 1
Source name LAT3YF CD5+ gamma delta T cells
Organism Mus musculus
Extracted molecule total RNA
 
Channel 2
Source name wildtype CD5+ gamma delta T cells
Organism Mus musculus
Extracted molecule total RNA
 
 
Description ratio profile (dye-reversal: -polarity)
CD5+ gamma delta T cells were positively sorted (FACSDiva) from wildtype or from Lat3YF spleens using MACS and anti-CD5 beads
 
Submission date Feb 17, 2005
Last update date May 27, 2005
Contact name Hans-Joachim Mollenkopf
E-mail(s) mollenkopf@mpiib-berlin.mpg.de
Phone +49 30 28460 482
Organization name Max-Planck-Institute for Infection Biology
Lab Microarray/Genomics Core Facility
Street address Charitéplatz 1
City Berlin
ZIP/Postal code 10117
Country Germany
 
Platform ID GPL1868
Series (1)
GSE2287 (ratio exp) LAT3YF CD5+ gamma delta T cells

Data table header descriptions
ID_REF
Fold Change value representing how many fold a gene is up- or down-regulated relative to the baseline
P-value value describing the confidence that the gene's expression ratio reflects a change in expression
Intensity1 Cy3 absolute intensity measurement after background substraction and normalization
Intensity2 Cy5 absolute intensity measurement after background substraction and normalization
Log(Intensity) log10 of the average of intensity1 and intensity2
Ratio normalized signal intensity2 devided by signal intensity1
VALUE log10 of the expression ratio
Log(Error) error in the log ratio
X Dev difference between the experiment and baseline intensity devided by the standard deviation of the difference
Accession # GenBank accession number
Sequence Name(s) sequence name
Sequence Description sequence description

Data table
ID_REF Fold Change P-value Intensity1 Intensity2 Log(Intensity) Ratio VALUE Log(Error) X Dev Accession # Sequence Name(s) Sequence Description
633390 2.96347 2.38E-06 309.92703 918.54205 2.72718 2.96347 0.4718 0.1 4.718 NM_008042 Fprl1 formyl peptide receptor-like 1
633391 1.0517 0.82673 15639.12695 16447.57227 4.20516 1.0517 0.02189 0.1 0.2189 NM_016715 Tslpr "thymic stromal-derived lymphopoietin, receptor"
633392 -1.02204 0.92455 13540.67871 13248.59961 4.12691 0.97843 -0.00947 0.1 -0.0947 AI256499 AI256499 "EST, Weakly similar to 0806162A ATPase 6 [M.musculus]"
633393 1.22888 0.37073 92687.48438 113902.3594 5.01178 1.22888 0.08951 0.1 0.8951 AI462013 AI462013 "ESTs, Highly similar to HYPOTHETICAL 272.0 KD PROTEIN C50C3.6 IN CHROMOSOME III [Caenorhabditis elegans]"
633394 -1.25401 0.62115 89.10345 71.05421 1.90074 0.79744 -0.0983 0.1989 -0.49422 AI662810 AI662810 ESTs
633395 2.54976 0.42378 18.36749 46.83236 1.4673 2.54976 0.4065 0.5082 0.79988 NM_008374 Il9r interleukin 9 receptor
633396 -1.49451 0.1081 194.2211 129.95508 2.20104 0.66911 -0.1745 0.1086 -1.60681 NM_009981 Pcyt1a "phosphate cytidylyltransferase 1, choline, alpha isoform"
633397 1.60435 0.04007 150.84995 242.0361 2.28121 1.60435 0.2053 0.1 2.053 AI894170 AI894170 "ESTs, Moderately similar to 5-METHYLTETRAHYDROFOLATE--HOMOCYSTEINE METHYLTRANSFERASE [Escherichia coli]"
633398 1.12844 0.59972 84293.41406 95120.71094 4.95203 1.12844 0.05248 0.1 0.5248 AW455556 AW455556 "ESTs, Weakly similar to CG11399 gene product [D.melanogaster]"
633399 -2.21106 0.01099 179.77432 81.2982 2.0824 0.45227 -0.3446 0.1355 -2.54317 NM_021443 AB023418 cDNA sequence AB023418
633400 1.27409 0.2928 11130.32227 14181.875 4.09912 1.27409 0.1052 0.1 1.052 AI451221 AI451221 ESTs
633401 1.36239 0.17927 489.02719 666.3031 2.7565 1.36239 0.1343 0.1 1.343 AI448098 AI448098 ESTs
633402 -1.08543 0.72184 1018.5451 938.38165 2.99018 0.9213 -0.0356 0.1 -0.356 BE946070 BE946070 "ESTs, Weakly similar to ORF YKL201c [S.cerevisiae]"
633403 1.2121 0.87936 25.40434 30.79238 1.44668 1.2121 0.08354 0.5504 0.15178 NM_011160 Prkg1 "protein kinase, cGMP-dependent, type I"
633404 -1.24761 0.33665 3903.29785 3128.64771 3.54339 0.80153 -0.09608 0.1 -0.9608 BF456565 BF456565 "ESTs, Weakly similar to putative membrane associated progesterone receptor component [M.musculus]"
633405 -1.16356 0.5106 256.52643 220.46832 2.37624 0.85943 -0.06579 0.1 -0.6579 NM_008308 Htr1a 5-hydroxytryptamine (serotonin) receptor 1A
633406 2.40824 0.00014 859.54724 2070.06641 3.12513 2.40824 0.3817 0.1 3.817 NM_010591 Jun Jun oncogene
633407 -1.39348 0.3136 134.78262 96.73353 2.05761 0.71763 -0.1441 0.143 -1.00769 AV254337 AV254337 "EST, Moderately similar to NEK1_MOUSE SERINE/THREONINE-PROTEIN KINASE NEK1 [M.musculus]"
633408 3.58922 0.29283 14.4703 51.93354 1.43796 3.58922 0.555 0.5276 1.05193 NM_013622 Oprd1 "opioid receptor, delta 1"
633409 -1.27761 0.28733 1254.44214 981.771 3.04523 0.78271 -0.1064 0.1 -1.064 AV374708 AV374708 "ESTs, Highly similar to implantation-associated protein [R.norvegicus]"

Total number of rows: 8014

Table truncated, full table size 1052 Kbytes.




Supplementary file Size Download File type/resource
GSM42568.tif.gz 30.6 Mb (ftp)(http) TIFF

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap