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Sample GSM427010 Query DataSets for GSM427010
Status Public on Dec 01, 2009
Title I25M159
Sample type RNA
 
Source name Leukocytes, Ighrem, Rural
Organism Homo sapiens
Characteristics geographic location: Ighrem
lifestyle: rural
gender: male
tissue: peripheral blood
cell type: leukocytes
Extracted molecule total RNA
Extraction protocol Total RNA was extrated from leukocyte samples using Ambion's Leukolocks kit. Quality control was performed using Agilent's Bioanalyzer.
Label Biotin
Label protocol cDNA and cRNA labeling and amplification were all performed using a single kit: Ambion's Illumina TotalPrep RNA Amplification kit.
 
Hybridization protocol Illumina's BeadArray protocol
Scan protocol Illumina's BeadArray protocol and BeadStudio (Gene expression Module)
Description I25M
Data processing Raw data was log2 transformed and median-centered using JMP Genomics (SAS, Cary NC).
 
Submission date Jul 13, 2009
Last update date Nov 12, 2009
Contact name Youssef Idaghdour
E-mail(s) yidaghd@ncsu.edu
Organization name NCSU
Department Genetics
Lab Gibson
Street address South Gardner Hall
City Raleigh
State/province NC
ZIP/Postal code 27695
Country USA
 
Platform ID GPL6947
Series (1)
GSE17065 Geographical Genomics of Human Leukocytes Gene Expression Variation

Data table header descriptions
ID_REF
VALUE log2 transformed and median-centered signal

Data table
ID_REF VALUE
ILMN_1762337 -0.229464131
ILMN_2055271 0.171439883
ILMN_1736007 -0.289536558
ILMN_2383229 -0.2991926
ILMN_1806310 -0.162716061
ILMN_1779670 -0.099560753
ILMN_2321282 0.425294067
ILMN_1671474 0.033561454
ILMN_1772582 -0.359839888
ILMN_1735698 0.153213041
ILMN_1653355 0.050708661
ILMN_1717783 -0.371445882
ILMN_1705025 -0.020385392
ILMN_1814316 -0.554917537
ILMN_2359168 -0.080275423
ILMN_1731507 -0.512128852
ILMN_1787689 -0.05596767
ILMN_1745607 -0.309124371
ILMN_2136495 -0.314069665
ILMN_1668111 -0.451114317

Total number of rows: 48803

Table truncated, full table size 1209 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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