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Sample GSM427034 Query DataSets for GSM427034
Status Public on Dec 01, 2009
Title I56M183
Sample type RNA
 
Source name Leukocytes, Ighrem, Rural
Organism Homo sapiens
Characteristics geographic location: Ighrem
lifestyle: rural
gender: male
tissue: peripheral blood
cell type: leukocytes
Extracted molecule total RNA
Extraction protocol Total RNA was extrated from leukocyte samples using Ambion's Leukolocks kit. Quality control was performed using Agilent's Bioanalyzer.
Label Biotin
Label protocol cDNA and cRNA labeling and amplification were all performed using a single kit: Ambion's Illumina TotalPrep RNA Amplification kit.
 
Hybridization protocol Illumina's BeadArray protocol
Scan protocol Illumina's BeadArray protocol and BeadStudio (Gene expression Module)
Description I56M
Data processing Raw data was log2 transformed and median-centered using JMP Genomics (SAS, Cary NC).
 
Submission date Jul 13, 2009
Last update date Nov 12, 2009
Contact name Youssef Idaghdour
E-mail(s) yidaghd@ncsu.edu
Organization name NCSU
Department Genetics
Lab Gibson
Street address South Gardner Hall
City Raleigh
State/province NC
ZIP/Postal code 27695
Country USA
 
Platform ID GPL6947
Series (1)
GSE17065 Geographical Genomics of Human Leukocytes Gene Expression Variation

Data table header descriptions
ID_REF
VALUE log2 transformed and median-centered signal

Data table
ID_REF VALUE
ILMN_1762337 -0.302918624
ILMN_2055271 0.17415155
ILMN_1736007 -0.173025129
ILMN_2383229 -0.363742464
ILMN_1806310 -0.14400265
ILMN_1779670 -0.135466713
ILMN_2321282 0.52038377
ILMN_1671474 -0.177786127
ILMN_1772582 -0.272247096
ILMN_1735698 -0.231471062
ILMN_1653355 0.141833794
ILMN_1717783 -0.321124075
ILMN_1705025 0.054828595
ILMN_1814316 -0.193133733
ILMN_2359168 -0.153480088
ILMN_1731507 -0.578164481
ILMN_1787689 0.060617887
ILMN_1745607 -0.212457252
ILMN_2136495 -0.184153991
ILMN_1668111 -0.440687204

Total number of rows: 48803

Table truncated, full table size 1209 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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