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Sample GSM427042 Query DataSets for GSM427042
Status Public on Dec 01, 2009
Title I81F191
Sample type RNA
 
Source name Leukocytes, Ighrem, Rural
Organism Homo sapiens
Characteristics geographic location: Ighrem
lifestyle: rural
gender: female
tissue: peripheral blood
cell type: leukocytes
Extracted molecule total RNA
Extraction protocol Total RNA was extrated from leukocyte samples using Ambion's Leukolocks kit. Quality control was performed using Agilent's Bioanalyzer.
Label Biotin
Label protocol cDNA and cRNA labeling and amplification were all performed using a single kit: Ambion's Illumina TotalPrep RNA Amplification kit.
 
Hybridization protocol Illumina's BeadArray protocol
Scan protocol Illumina's BeadArray protocol and BeadStudio (Gene expression Module)
Description I81F
Data processing Raw data was log2 transformed and median-centered using JMP Genomics (SAS, Cary NC).
 
Submission date Jul 13, 2009
Last update date Nov 12, 2009
Contact name Youssef Idaghdour
E-mail(s) yidaghd@ncsu.edu
Organization name NCSU
Department Genetics
Lab Gibson
Street address South Gardner Hall
City Raleigh
State/province NC
ZIP/Postal code 27695
Country USA
 
Platform ID GPL6947
Series (1)
GSE17065 Geographical Genomics of Human Leukocytes Gene Expression Variation

Data table header descriptions
ID_REF
VALUE log2 transformed and median-centered signal

Data table
ID_REF VALUE
ILMN_1762337 -0.00682169
ILMN_2055271 0.30269534
ILMN_1736007 -0.251694456
ILMN_2383229 -0.220178499
ILMN_1806310 0.043748344
ILMN_1779670 -0.091403442
ILMN_2321282 0.492987534
ILMN_1671474 -0.168678836
ILMN_1772582 -0.115951875
ILMN_1735698 -0.045263887
ILMN_1653355 0.150192755
ILMN_1717783 -0.31044889
ILMN_1705025 -0.120882174
ILMN_1814316 -0.399487842
ILMN_2359168 -0.238022162
ILMN_1731507 -0.567526178
ILMN_1787689 -0.118828828
ILMN_1745607 -0.166456744
ILMN_2136495 -0.287581646
ILMN_1668111 -0.249794895

Total number of rows: 48803

Table truncated, full table size 1209 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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