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Sample GSM428963 Query DataSets for GSM428963
Status Public on Feb 21, 2010
Title T9 epiblast stem cells
Sample type RNA
Source name cell culture from T9 epiblast stem cells
Organism Mus musculus
Characteristics cell line: T9 (129 background)
Treatment protocol untreated
Growth protocol Grown on inactivated mouse embryonic fibroblasts (CF1) in KSR medium supplemented with 5 ng/ml FGF2. Cells were harvested at subconfluence with collagenase IV with minimal feeder contamination.
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy kit with on-column DNA digestion
Label Cy-3
Label protocol Ambion TotalPrep RNA Amplification Kit. RNA in put: 400ng, IVT: 12h
Hybridization protocol According to manufacturer's instructions. Hybridization time: 18h
Scan protocol Illumina iScan system using default settings
Description N/A
Data processing Cubic Spline normalization with background subtraction in BeadStudio. Values below 50% of the detection threshold intensity (detection p value = 0.010) were set to "Null" (= not expressed / detectable).
Submission date Jul 16, 2009
Last update date Feb 20, 2010
Contact name Boris Greber
Organization name Max Planck Institute for Molecular Biomedicine
Department Cell and Developmental Biology
Street address Röntgenstraße 20
City Münster
ZIP/Postal code 48149
Country Germany
Platform ID GPL6885
Series (2)
GSE17131 Expression profiles of two epiblast stem cell lines and one ES cell line
GSE17202 Expression profiles of epiblast stem cells and embryonic stem cells

Data table header descriptions
VALUE normalized and background subtracted intensity value

Data table
ILMN_1212607 null
ILMN_1212612 null
ILMN_1212619 11.81816
ILMN_1212628 null
ILMN_1212632 31.60872
ILMN_1212636 2632.594
ILMN_1212637 215.8582
ILMN_1212645 null
ILMN_1212648 91.95606
ILMN_1212653 7.805937
ILMN_1212672 105.5787
ILMN_1212682 null
ILMN_1212683 null
ILMN_1212685 null
ILMN_1212692 34.67939
ILMN_1212693 27.86144
ILMN_1212695 null
ILMN_1212698 null
ILMN_1212702 26.66804
ILMN_1212703 11.76589

Total number of rows: 25697

Table truncated, full table size 500 Kbytes.

Supplementary file Size Download File type/resource
GSM428963_T1_T9_epiSCs_raw.txt.gz 375.4 Kb (ftp)(http) TXT
Raw data provided as supplementary file
Processed data included within Sample table

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