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Sample GSM433289 Query DataSets for GSM433289
Status Public on Jul 25, 2009
Title 18dpp_homo_tdrd6-KO
Sample type SRA
 
Source name testes
Organism Mus musculus
Characteristics tissue: 18dpp mouse testes
Extracted molecule total RNA
Extraction protocol total RNA was size selected (19-33nt)
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description 19-33 nt RNA isolated from testes of 18 days old mice
library_strategy: sequential ligation of 3' and 5' linkers using T4 RNA ligase follwed by PCR amplification
library_source: small RNA
library_selection: other
Data processing Reads were aligned to the reference genome allowing zero mismatches. Number of mapping in the genome and genomic annotation were extracted.
 
Submission date Jul 24, 2009
Last update date May 15, 2019
Contact name Vasily Vagin
E-mail(s) vagin@cshl.edu
Organization name Cold Spring Harbor
Lab Hannon's
Street address 1 Bungtown Rd
City Cold Spring Harbor
State/province NY
ZIP/Postal code 11724
Country USA
 
Platform ID GPL9185
Series (1)
GSE17319 Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family members
Relations
SRA SRX012166
BioSample SAMN00004286

Data table header descriptions
SEQUENCE
COUNT counts

Data table
SEQUENCE COUNT
AAAAAAAAACAAAAACAAAAAAGCCTGTG 0
AAAAAAAAACAAAAACAAAAAAGCCTGTGCT 0
AAAAAAAAACAAACAAGC 1
AAAAAAAAACAAAGGCAGG 1
AAAAAAAAACAAATCCTGGACAAGCTG 0
AAAAAAAAACAACCAGAGGACACACATCC 0
AAAAAAAAACAACTGATCGGGG 0
AAAAAAAAACAAGAGGTA 0
AAAAAAAAACAAGAGGTAAAGGTGCTT 0
AAAAAAAAACAAGGT 1
AAAAAAAAACAAGTTCCCAGCAAAGAGGGT 0
AAAAAAAAACAAGTTCCCAGCAAAGAGGGTT 0
AAAAAAAAACAATACAAGGACGGAAAC 0
AAAAAAAAACAATGTC 1
AAAAAAAAACAATGTCACATGGATGAT 0
AAAAAAAAACAATGTCACATGGATGATG 0
AAAAAAAAACAATGTCACATGGATGATGC 1
AAAAAAAAACAATGTCACATGGATGATGCC 0
AAAAAAAAACACAAGGATT 0
AAAAAAAAACACAAGGATTTGATT 0

Total number of rows: 6246223

Table truncated, full table size 176127 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Processed data included within Sample table
Raw data are available in SRA
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