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Sample GSM434941 Query DataSets for GSM434941
Status Public on Dec 08, 2011
Title Mouse 595 proximal colon
Sample type RNA
 
Source name Healthy male, autoclaved chow diet
Organism Mus musculus
Characteristics tissue: proximal colon
strain: GF
genotype: Myd88 -/-
Extracted molecule total RNA
Extraction protocol RNA was isolated using the RNeasy mini kit or the RNeasy Lipid tissue mini kit (QIAGEN), according to the manufacturer's instructions.
Label biotin
Label protocol Single-stranded cDNA was generated from the amplified cRNA with the WT cDNA Synthesis Kit (Affymetrix) and then fragmented and labeled with the WT Terminal Labeling Kit (Affymetrix).
 
Hybridization protocol Samples were hybridized with GeneChip Mouse Gene 1.0 ST Arrays (Affymetrix) and scanned at the Uppsala Array Platform microarray core facility (Sweden).
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix)
Description RMA expression value derived from Expression Console software; gene level analysis
Data processing Raw data were processed with the Expression Console software (Affymetrix) for background correction and normalization. Downstream data analysis and statistical evaluations were performed using customized matlab scripts.
 
Submission date Jul 30, 2009
Last update date Dec 08, 2011
Contact name Erik Larsson
E-mail(s) erik.larsson@wlab.gu.se
Phone 0046707992946
Organization name University of Gothenburg
Department Wallenberg Laboratory
Street address Bruna stråket 16
City Gothenburg
ZIP/Postal code SE 413 45
Country Sweden
 
Platform ID GPL6246
Series (1)
GSE17438 Transcriptional profiling of 77 tissue samples from germ-free and conventionally raised mice.

Data table header descriptions
ID_REF
VALUE RMA expression value

Data table
ID_REF VALUE
10338001 12.4407
10338002 7.2211
10338003 10.6232
10338004 9.66164
10338005 2.56847
10338006 2.7991
10338007 3.26078
10338008 4.27667
10338009 9.31368
10338010 2.59515
10338011 6.42048
10338012 2.67712
10338013 2.47971
10338014 2.48292
10338015 2.48061
10338016 8.58154
10338017 13.5033
10338018 7.64572
10338019 5.85824
10338020 9.34578

Total number of rows: 35557

Table truncated, full table size 586 Kbytes.




Supplementary file Size Download File type/resource
GSM434941.CEL.gz 4.0 Mb (ftp)(http) CEL
GSM434941.chp.gz 270.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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