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Sample GSM435084 Query DataSets for GSM435084
Status Public on Mar 31, 2010
Title Female, eGFP, Replicate 1
Sample type RNA
 
Source name Female, eGFP
Organism Mus musculus
Characteristics strain: C57BL/6J
age: 4 months
tissue: liver
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 1
Data processing The data were normalised using quantile normalisation with Lumi (Bioconductor) in R
 
Submission date Jul 30, 2009
Last update date Mar 31, 2010
Contact name Sulin Wu
Organization name UCLA
Department Human Genetics
Lab Lusis/Drake
Street address 675 Charles Young E. Dr,
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6887
Series (1)
GSE17442 Genome-wide analysis of USF1-associated differential gene expression in mouse liver

Data table header descriptions
ID_REF
VALUE Cubic Root normalized

Data table
ID_REF VALUE
ILMN_1212602 31.58869278
ILMN_1212603 28.16806472
ILMN_1212605 205.4244222
ILMN_1212607 33.19160222
ILMN_1212612 56.92954861
ILMN_1212614 30.22030236
ILMN_1212619 30.01868861
ILMN_1212623 29.7011325
ILMN_1212625 405.1127444
ILMN_1212626 46.35409167
ILMN_1212628 30.01438167
ILMN_1212632 46.21252639
ILMN_1212633 32.73897819
ILMN_1212636 1187.319986
ILMN_1212637 183.4843208
ILMN_1212638 1283.231153
ILMN_1212639 70.17612917
ILMN_1212644 31.85724431
ILMN_1212645 1482.787319
ILMN_1212646 159.0471708

Total number of rows: 45281

Table truncated, full table size 1099 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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