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Sample GSM437648 Query DataSets for GSM437648
Status Public on Jan 13, 2010
Title FFPE lung tumor #4
Sample type RNA
 
Source name Lung tumor
Organism Homo sapiens
Characteristics tissue: lung tumor
Treatment protocol Formalin-fixed, paraffin-embedded
Growth protocol Formalin-fixed, paraffin-embedded
Extracted molecule total RNA
Extraction protocol Fresh-frozen RNA was extracted with a standard Rneasy Kit (Qiagen); FFPE RNA was extracted with a FormaPure Kit (Agencourt Bioscience Corporation)
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 4
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 07, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17558 Whole-Genome Gene Expression Profiling of FFPE in Normal and Tumor Lung Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
FFPE Lung TUM #4.Avg_NBEADS
FFPE Lung TUM #4.BEAD_STDERR
FFPE Lung TUM #4.Detection Pval

Data table
ID_REF VALUE FFPE Lung TUM #4.Avg_NBEADS FFPE Lung TUM #4.BEAD_STDERR FFPE Lung TUM #4.Detection Pval
ILMN_1762337 1418.431 39 27.21516 0
ILMN_2055271 200.49 23 6.348922 0.05177994
ILMN_2383229 80.35406 31 3.496817 0.605178
ILMN_1806310 92.09217 29 3.7031 0.3754045
ILMN_1779670 125.1067 47 3.762789 0.1521036
ILMN_2321282 159.576 38 5.531566 0.0776699
ILMN_1772582 89.0144 30 3.616303 0.4368932
ILMN_1717783 193.6964 28 6.523532 0.06148867
ILMN_1814316 218.1079 31 5.320604 0.04530744
ILMN_2359168 235.5062 40 6.248811 0.03883495
ILMN_1731507 54.85866 42 2.487458 0.9935275
ILMN_1787689 138.8093 31 4.827537 0.1165049
ILMN_1745607 9232.721 34 363.8541 0
ILMN_2136495 621.3427 26 7.174945 0.003236246
ILMN_1668111 56.70837 41 2.694061 0.9902912
ILMN_2295559 83.21971 54 2.681015 0.5501618
ILMN_1735045 5135.593 44 117.5332 0
ILMN_1680754 84.95599 41 3.788049 0.5145631
ILMN_2375184 114.9045 44 4.013725 0.184466
ILMN_1659452 113.0553 50 3.572446 0.2006472

Total number of rows: 24526

Table truncated, full table size 967 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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