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GEO accession:
Sample GSM437648
Query DataSets for GSM437648
Status
Public on Jan 13, 2010
Title
FFPE lung tumor #4
Sample type
RNA
Source name
Lung tumor
Organism
Homo sapiens
Characteristics
tissue: lung tumor
Treatment protocol
Formalin-fixed, paraffin-embedded
Growth protocol
Formalin-fixed, paraffin-embedded
Extracted molecule
total RNA
Extraction protocol
Fresh-frozen RNA was extracted with a standard Rneasy Kit (Qiagen); FFPE RNA was extracted with a FormaPure Kit (Agencourt Bioscience Corporation)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 4
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 07, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17558
Whole-Genome Gene Expression Profiling of FFPE in Normal and Tumor Lung Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE Lung TUM #4.Avg_NBEADS
FFPE Lung TUM #4.BEAD_STDERR
FFPE Lung TUM #4.Detection Pval
Data table
ID_REF
VALUE
FFPE Lung TUM #4.Avg_NBEADS
FFPE Lung TUM #4.BEAD_STDERR
FFPE Lung TUM #4.Detection Pval
ILMN_1762337
1418.431
39
27.21516
0
ILMN_2055271
200.49
23
6.348922
0.05177994
ILMN_2383229
80.35406
31
3.496817
0.605178
ILMN_1806310
92.09217
29
3.7031
0.3754045
ILMN_1779670
125.1067
47
3.762789
0.1521036
ILMN_2321282
159.576
38
5.531566
0.0776699
ILMN_1772582
89.0144
30
3.616303
0.4368932
ILMN_1717783
193.6964
28
6.523532
0.06148867
ILMN_1814316
218.1079
31
5.320604
0.04530744
ILMN_2359168
235.5062
40
6.248811
0.03883495
ILMN_1731507
54.85866
42
2.487458
0.9935275
ILMN_1787689
138.8093
31
4.827537
0.1165049
ILMN_1745607
9232.721
34
363.8541
0
ILMN_2136495
621.3427
26
7.174945
0.003236246
ILMN_1668111
56.70837
41
2.694061
0.9902912
ILMN_2295559
83.21971
54
2.681015
0.5501618
ILMN_1735045
5135.593
44
117.5332
0
ILMN_1680754
84.95599
41
3.788049
0.5145631
ILMN_2375184
114.9045
44
4.013725
0.184466
ILMN_1659452
113.0553
50
3.572446
0.2006472
Total number of rows:
24526
Table truncated, full table size
967 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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