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GEO accession:
Sample GSM437941
Query DataSets for GSM437941
Status
Public on Jan 13, 2010
Title
FFPE #1-200 ng rep2
Sample type
RNA
Source name
Human ovarian tumor
Organism
Homo sapiens
Characteristics
gender: Female
tissue: Ovary
Extracted molecule
total RNA
Extraction protocol
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 2
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 10, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17572
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE #1-200 rep2.Avg_NBEADS
FFPE #1-200 rep2.BEAD_STDERR
FFPE #1-200 rep2.Detection Pval
Data table
ID_REF
VALUE
FFPE #1-200 rep2.Avg_NBEADS
FFPE #1-200 rep2.BEAD_STDERR
FFPE #1-200 rep2.Detection Pval
ILMN_1762337
383.4969
52
21.26882
0
ILMN_2055271
372.6782
35
9.311725
0
ILMN_2383229
538.6344
24
14.20399
0
ILMN_1806310
57.7917
35
4.684115
0.08414239
ILMN_1779670
1750.502
49
36.95042
0
ILMN_2321282
66.26949
47
3.931562
0.06472492
ILMN_1772582
113.0153
42
5.536576
0.01618123
ILMN_1717783
48.07791
28
3.679817
0.1682848
ILMN_1814316
7278.413
36
224.5098
0
ILMN_2359168
6993.719
42
121.7619
0
ILMN_1731507
135.3753
33
8.258374
0.01618123
ILMN_1787689
73.67543
41
4.077709
0.05501618
ILMN_1745607
4285.238
35
188.4394
0
ILMN_2136495
106.0104
50
4.035695
0.01941748
ILMN_1668111
325.5969
42
9.343225
0
ILMN_2295559
47.08858
48
2.696137
0.197411
ILMN_1735045
476.233
40
34.28522
0
ILMN_1680754
50.11446
40
3.659331
0.1521036
ILMN_2375184
198.4384
62
5.919185
0.009708738
ILMN_1659452
184.3854
36
7.008784
0.01294498
Total number of rows:
24526
Table truncated, full table size
922 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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