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GEO accession:
Sample GSM437945
Query DataSets for GSM437945
Status
Public on Jan 13, 2010
Title
FFPE #1-50 ng rep1
Sample type
RNA
Source name
Human ovarian tumor
Organism
Homo sapiens
Characteristics
gender: Female
tissue: Ovary
Extracted molecule
total RNA
Extraction protocol
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 1
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 10, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17572
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE #1-50 rep1.Avg_NBEADS
FFPE #1-50 rep1.BEAD_STDERR
FFPE #1-50 rep1.Detection Pval
Data table
ID_REF
VALUE
FFPE #1-50 rep1.Avg_NBEADS
FFPE #1-50 rep1.BEAD_STDERR
FFPE #1-50 rep1.Detection Pval
ILMN_1762337
303.9731
42
9.705969
0
ILMN_2055271
511.0688
26
16.46318
0
ILMN_2383229
371.332
32
7.869806
0
ILMN_1806310
48.53226
43
4.6443
0.1779935
ILMN_1779670
1674.067
33
16.5422
0
ILMN_2321282
64.03665
43
3.221339
0.05825243
ILMN_1772582
111.3939
59
4.354722
0.01618123
ILMN_1717783
45.47711
34
2.921903
0.2588997
ILMN_1814316
7379.959
38
151.5196
0
ILMN_2359168
7275.425
39
121.5055
0
ILMN_1731507
161.8635
41
6.252604
0.01294498
ILMN_1787689
53.96346
42
4.004034
0.09708738
ILMN_1745607
3792.256
45
90.38164
0
ILMN_2136495
158.8251
36
3.833871
0.01294498
ILMN_1668111
31.7493
45
2.993701
0.9093851
ILMN_2295559
95.79353
49
4.382529
0.02912621
ILMN_1735045
386.3537
47
14.26697
0
ILMN_1680754
55.4153
30
4.467586
0.08737864
ILMN_2375184
251.9918
40
7.044024
0
ILMN_1659452
249.065
44
6.273345
0
Total number of rows:
24526
Table truncated, full table size
914 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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