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GEO accession:
Sample GSM437946
Query DataSets for GSM437946
Status
Public on Jan 13, 2010
Title
FFPE #2-50 ng rep1
Sample type
RNA
Source name
Human ovarian tumor
Organism
Homo sapiens
Characteristics
gender: Female
tissue: Ovary
Extracted molecule
total RNA
Extraction protocol
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 1
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 10, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17572
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE #2-50 rep1.Avg_NBEADS
FFPE #2-50 rep1.BEAD_STDERR
FFPE #2-50 rep1.Detection Pval
Data table
ID_REF
VALUE
FFPE #2-50 rep1.Avg_NBEADS
FFPE #2-50 rep1.BEAD_STDERR
FFPE #2-50 rep1.Detection Pval
ILMN_1762337
982.1763
39
28.37515
0
ILMN_2055271
501.7571
39
8.769411
0
ILMN_2383229
291.8843
42
3.534979
0.003236246
ILMN_1806310
65.06553
30
3.420397
0.1067961
ILMN_1779670
1379.262
48
14.05784
0
ILMN_2321282
70.06882
37
2.92666
0.07443365
ILMN_1772582
168.243
56
4.501407
0.01294498
ILMN_1717783
65.2078
23
4.232328
0.1067961
ILMN_1814316
9730.396
34
216.5205
0
ILMN_2359168
9539.313
37
161.5768
0
ILMN_1731507
873.6245
47
19.96482
0
ILMN_1787689
50.32812
33
3.347166
0.2783172
ILMN_1745607
2857.107
33
64.24512
0
ILMN_2136495
154.3043
37
3.31793
0.01294498
ILMN_1668111
38.25753
49
2.715752
0.6763754
ILMN_2295559
30.5197
40
2.169374
0.9514563
ILMN_1735045
686.312
38
19.98297
0
ILMN_1680754
53.51675
36
2.874363
0.2265372
ILMN_2375184
243.8315
42
5.02058
0.006472492
ILMN_1659452
227.5904
48
4.494554
0.006472492
Total number of rows:
24526
Table truncated, full table size
923 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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