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GEO accession:
Sample GSM437952
Query DataSets for GSM437952
Status
Public on Jan 13, 2010
Title
FFPE #4-50 ng rep2
Sample type
RNA
Source name
Human ovarian tumor
Organism
Homo sapiens
Characteristics
gender: Female
tissue: Ovary
Extracted molecule
total RNA
Extraction protocol
RNA was extracted with a modified protocol of the RNeasy FFPE Kit (Qiagen)
Label
Cy3
Label protocol
Standard Illumina labelling protocol
Hybridization protocol
Standard Illumina hybridization protocol
Scan protocol
Standard Illumina scanning protocol
Description
replicate 2
Data processing
Raw data was analyzed using GenomeStudio v1.1
Submission date
Aug 10, 2009
Last update date
Jan 13, 2010
Contact name
Craig April
E-mail(s)
capril@illumina.com
Organization name
Illumina, Inc.
Street address
9885 Towne Centre Drive
City
San Diego
State/province
CA
ZIP/Postal code
92121-1975
Country
USA
Platform ID
GPL6883
Series (2)
GSE17572
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Ovarian Tissue Samples
GSE17599
Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples
Data table header descriptions
ID_REF
VALUE
quantile normalized
FFPE #4-50 rep2.Avg_NBEADS
FFPE #4-50 rep2.BEAD_STDERR
FFPE #4-50 rep2.Detection Pval
Data table
ID_REF
VALUE
FFPE #4-50 rep2.Avg_NBEADS
FFPE #4-50 rep2.BEAD_STDERR
FFPE #4-50 rep2.Detection Pval
ILMN_1762337
763.5433
46
39.44007
0
ILMN_2055271
505.4659
33
14.52015
0
ILMN_2383229
312.0109
35
9.202673
0
ILMN_1806310
49.85176
28
5.371385
0.2783172
ILMN_1779670
795.8911
41
23.7579
0
ILMN_2321282
102.0865
42
4.737387
0.0420712
ILMN_1772582
361.6638
33
13.98458
0
ILMN_1717783
267.4022
27
17.63389
0.003236246
ILMN_1814316
5710.132
31
218.9073
0
ILMN_2359168
5391.127
39
177.1523
0
ILMN_1731507
150.423
34
7.300951
0.01618123
ILMN_1787689
63.48231
41
3.962825
0.1035599
ILMN_1745607
2836.49
36
137.0205
0
ILMN_2136495
315.5161
28
13.49347
0
ILMN_1668111
41.72855
38
2.747532
0.5728155
ILMN_2295559
41.48655
35
2.887476
0.579288
ILMN_1735045
840.739
44
29.28006
0
ILMN_1680754
65.00951
31
3.705474
0.09708738
ILMN_2375184
130.25
45
5.494596
0.02588997
ILMN_1659452
134.4555
46
5.617286
0.01941748
Total number of rows:
24526
Table truncated, full table size
921 Kbytes
.
Supplementary data files not provided
Processed data included within Sample table
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