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Sample GSM437958 Query DataSets for GSM437958
Status Public on Jan 13, 2010
Title R/M 90/10 rep2
Sample type RNA
 
Source name Burkitts Lymphoma (Raji) Total RNA (Ambion Cat# AM7876); Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics ratio mix: 90% Raji/10% MCF-7
cell types: Burkitts Lymphoma (Raji) and Breast Adenocarcinoma (MCF-7)
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 2
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 10, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17573 Whole-Genome Gene Expression Profiling of FFPE Raji and MCF-7 Mixed Ratio Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
R/M 90/10 rep2.Avg_NBEADS
R/M 90/10 rep2.BEAD_STDERR
R/M 90/10 rep2.Detection Pval

Data table
ID_REF VALUE R/M 90/10 rep2.Avg_NBEADS R/M 90/10 rep2.BEAD_STDERR R/M 90/10 rep2.Detection Pval
ILMN_1762337 5258.839 28 198.5536 0
ILMN_2055271 221.6037 29 11.51693 0.04854369
ILMN_2383229 107.3093 28 17.29717 0.08737864
ILMN_1806310 61.82073 34 12.08218 0.2783172
ILMN_1779670 28.23457 38 9.305998 0.7119741
ILMN_2321282 88.10758 20 25.65521 0.1067961
ILMN_1772582 739.1433 21 36.3875 0.003236246
ILMN_1717783 273.1322 36 22.34026 0.03236246
ILMN_1814316 3429.517 36 103.4742 0
ILMN_2359168 3717.35 35 135.8528 0
ILMN_1731507 268.2238 30 16.6673 0.03236246
ILMN_1787689 103.4121 35 14.20848 0.09385113
ILMN_1745607 32.6892 34 12.50622 0.6310679
ILMN_2136495 91.07066 27 12.32536 0.1003236
ILMN_1668111 2.126484 33 11.98723 0.9611651
ILMN_2295559 29.53506 40 10.85719 0.6731392
ILMN_1735045 5814.128 31 309.6823 0
ILMN_1680754 60.82918 38 15.62547 0.2815534
ILMN_2375184 68.25243 32 12.26949 0.2168285
ILMN_1659452 92.15546 43 15.75623 0.1003236

Total number of rows: 24526

Table truncated, full table size 944 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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