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Sample GSM437965 Query DataSets for GSM437965
Status Public on Jan 13, 2010
Title R/M 33/66 rep2
Sample type RNA
 
Source name Burkitts Lymphoma (Raji) Total RNA (Ambion Cat# AM7876); Breast Adenocarcinoma (MCF-7) Total RNA (Ambion Cat# AM7846)
Organism Homo sapiens
Characteristics ratio mix: 33% Raji/66% MCF-7
cell types: Burkitts Lymphoma (Raji) and Breast Adenocarcinoma (MCF-7)
Extracted molecule total RNA
Extraction protocol Ambion extraction protocol
Label Cy3
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 1
Data processing Raw data was analyzed using GenomeStudio v1.1
 
Submission date Aug 10, 2009
Last update date Jan 13, 2010
Contact name Craig April
E-mail(s) capril@illumina.com
Organization name Illumina, Inc.
Street address 9885 Towne Centre Drive
City San Diego
State/province CA
ZIP/Postal code 92121-1975
Country USA
 
Platform ID GPL6883
Series (2)
GSE17573 Whole-Genome Gene Expression Profiling of FFPE Raji and MCF-7 Mixed Ratio Tissue Samples
GSE17599 Whole-Genome Gene Expression Profiling of Formalin-Fixed, Paraffin-Embedded Tissue Samples

Data table header descriptions
ID_REF
VALUE quantile normalized
R/M 33/66 rep2.Avg_NBEADS
R/M 33/66 rep2.BEAD_STDERR
R/M 33/66 rep2.Detection Pval

Data table
ID_REF VALUE R/M 33/66 rep2.Avg_NBEADS R/M 33/66 rep2.BEAD_STDERR R/M 33/66 rep2.Detection Pval
ILMN_1762337 5296.096 40 242.8419 0
ILMN_2055271 123.7355 29 17.36715 0.04854369
ILMN_2383229 47.77978 29 12.85485 0.3624595
ILMN_1806310 41.79074 31 14.49975 0.4563107
ILMN_1779670 16.03979 38 9.741221 0.8446602
ILMN_2321282 93.25007 39 11.80079 0.08090615
ILMN_1772582 492.0183 41 25.35334 0
ILMN_1717783 768.0768 33 55.06257 0
ILMN_1814316 1210.477 30 60.01029 0
ILMN_2359168 1166.644 29 59.40694 0
ILMN_1731507 82.759 34 13.11262 0.1035599
ILMN_1787689 98.06718 29 14.62559 0.07119741
ILMN_1745607 107.8297 41 15.50509 0.06472492
ILMN_2136495 252.8419 35 25.31452 0.01941748
ILMN_1668111 41.63464 42 10.83121 0.4627832
ILMN_2295559 18.60101 48 8.358755 0.7993528
ILMN_1735045 4306.917 40 182.1054 0
ILMN_1680754 49.43103 34 18.0745 0.355987
ILMN_2375184 54.44029 50 15.52716 0.2815534
ILMN_1659452 80.54405 32 15.25132 0.1067961

Total number of rows: 24526

Table truncated, full table size 933 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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