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Sample GSM440157 Query DataSets for GSM440157
Status Public on Dec 22, 2009
Title Patient 1
Sample type RNA
 
Source name peripheral blood
Organism Homo sapiens
Characteristics disease: type 1 diabetes
gender: female
cell type: endothelial progenitor cell
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by DNase I treatment (Amersam Biosciences) in accordance with the prescribed protocol provided by the manufacturer
Label cy3
Label protocol Biotinylated cRNA were prepared with the Ambion Illumina® TotalPrepTM RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description patient 1
Data processing The data were normalized using quantile normalisation with IlluminaGUI in R and log2 transformed
 
Submission date Aug 13, 2009
Last update date Dec 22, 2009
Contact name Mario Pescatori
E-mail(s) mariopescatori@gmail.com
Phone 00393930761013
Organization name Health e-genomics
Street address Westplein 11
City rotterdam
ZIP/Postal code 3016BM
Country Netherlands
 
Platform ID GPL2700
Series (1)
GSE17635 Folic acid supplementation normalizes the endothelial progenitor cell transcriptome of patients with type 1 diabetes

Data table header descriptions
ID_REF
VALUE quantile normalized, log2

Data table
ID_REF VALUE
GI_10047089-S 7.850968151
GI_10047091-S 8.807465616
GI_10047093-S 8.675185214
GI_10047099-S 8.159855573
GI_10047103-S 9.034498083
GI_10047105-S 8.469692687
GI_10047121-S 7.7390422
GI_10047123-S 9.081966031
GI_10047133-A 8.358609996
GI_10047133-I 8.401012815
GI_10092578-S 7.875998865
GI_10092585-S 8.125542623
GI_10092596-S 11.89505571
GI_10092600-S 8.137199301
GI_10092602-S 8.361011641
GI_10092603-S 8.37703425
GI_10092611-A 9.609351907
GI_10092616-S 9.100062734
GI_10092618-S 9.337935437
GI_10092638-S 8.130071775

Total number of rows: 24354

Table truncated, full table size 611 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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