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Sample GSM442516 Query DataSets for GSM442516
Status Public on Oct 09, 2009
Title Grd, 8_hours, rep1
Sample type RNA
 
Source name Grd, 8_hours
Organism Mus musculus
Characteristics cell type: primary bone marrow dendritic cell
Treatment protocol NA
Growth protocol mouse primary BMDCs (Amit et al. 2009)
Extracted molecule total RNA
Extraction protocol miRNEASY (QIAGEN) as recommended by manufactor
Label Biotin
Label protocol Standard Affymetrix protocols for mouse ht arrays
 
Hybridization protocol Standard Affymetrix protocols for mouse ht arrays
Scan protocol Standard Affymetrix protocols for mouse ht arrays
Description 5500144052237031609409.G06
Data processing RMA - All values lower than 20 were replaced by 20. All probesets whose values in all samples are equal or below 20 were removed.
 
Submission date Aug 19, 2009
Last update date Oct 09, 2009
Contact name Tal Shay
Organization name Broad Institute
Street address 7CC
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL8759
Series (1)
GSE17721 Dendritic cell stimulation: 5 ligands, 9 time points

Data table header descriptions
ID_REF
VALUE RMA normalized intensity for probe set

Data table
ID_REF VALUE
1415670_at 312.8
1415671_at 1471.4
1415672_at 1412.2
1415673_at 52.1
1415674_a_at 516.5
1415675_at 258.1
1415676_a_at 1610.9
1415677_at 154.9
1415678_at 487.9
1415679_at 1159.1
1415680_at 271.9
1415681_at 319.5
1415682_at 69.6
1415683_at 1787.4
1415684_at 190.6
1415685_at 91.9
1415686_at 276.1
1415687_a_at 7569.7
1415688_at 444.3
1415689_s_at 138.4

Total number of rows: 18858

Table truncated, full table size 300 Kbytes.




Supplementary file Size Download File type/resource
GSM442516.CEL.gz 2.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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