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GEO accession:
Sample GSM442516
Query DataSets for GSM442516
Status
Public on Oct 09, 2009
Title
Grd, 8_hours, rep1
Sample type
RNA
Source name
Grd, 8_hours
Organism
Mus musculus
Characteristics
cell type: primary bone marrow dendritic cell
Treatment protocol
NA
Growth protocol
mouse primary BMDCs (Amit et al. 2009)
Extracted molecule
total RNA
Extraction protocol
miRNEASY (QIAGEN) as recommended by manufactor
Label
Biotin
Label protocol
Standard Affymetrix protocols for mouse ht arrays
Hybridization protocol
Standard Affymetrix protocols for mouse ht arrays
Scan protocol
Standard Affymetrix protocols for mouse ht arrays
Description
5500144052237031609409.G06
Data processing
RMA - All values lower than 20 were replaced by 20. All probesets whose values in all samples are equal or below 20 were removed.
Submission date
Aug 19, 2009
Last update date
Oct 09, 2009
Contact name
Tal Shay
Organization name
Broad Institute
Street address
7CC
City
Cambridge
State/province
MA
ZIP/Postal code
02139
Country
USA
Platform ID
GPL8759
Series (1)
GSE17721
Dendritic cell stimulation: 5 ligands, 9 time points
Data table header descriptions
ID_REF
VALUE
RMA normalized intensity for probe set
Data table
ID_REF
VALUE
1415670_at
312.8
1415671_at
1471.4
1415672_at
1412.2
1415673_at
52.1
1415674_a_at
516.5
1415675_at
258.1
1415676_a_at
1610.9
1415677_at
154.9
1415678_at
487.9
1415679_at
1159.1
1415680_at
271.9
1415681_at
319.5
1415682_at
69.6
1415683_at
1787.4
1415684_at
190.6
1415685_at
91.9
1415686_at
276.1
1415687_a_at
7569.7
1415688_at
444.3
1415689_s_at
138.4
Total number of rows:
18858
Table truncated, full table size
300 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM442516.CEL.gz
2.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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