GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM442518
Query DataSets for GSM442518
Status
Public on Oct 09, 2009
Title
Grd, 16_hours, rep1
Sample type
RNA
Source name
Grd, 16_hours
Organism
Mus musculus
Characteristics
cell type: primary bone marrow dendritic cell
Treatment protocol
NA
Growth protocol
mouse primary BMDCs (Amit et al. 2009)
Extracted molecule
total RNA
Extraction protocol
miRNEASY (QIAGEN) as recommended by manufactor
Label
Biotin
Label protocol
Standard Affymetrix protocols for mouse ht arrays
Hybridization protocol
Standard Affymetrix protocols for mouse ht arrays
Scan protocol
Standard Affymetrix protocols for mouse ht arrays
Description
5500144052237031609409.G08
Data processing
RMA - All values lower than 20 were replaced by 20. All probesets whose values in all samples are equal or below 20 were removed.
Submission date
Aug 19, 2009
Last update date
Oct 09, 2009
Contact name
Tal Shay
Organization name
Broad Institute
Street address
7CC
City
Cambridge
State/province
MA
ZIP/Postal code
02139
Country
USA
Platform ID
GPL8759
Series (1)
GSE17721
Dendritic cell stimulation: 5 ligands, 9 time points
Data table header descriptions
ID_REF
VALUE
RMA normalized intensity for probe set
Data table
ID_REF
VALUE
1415670_at
313
1415671_at
1623.5
1415672_at
1448.2
1415673_at
64
1415674_a_at
493.3
1415675_at
270.3
1415676_a_at
2164.7
1415677_at
550
1415678_at
440.9
1415679_at
1341.8
1415680_at
299
1415681_at
400.5
1415682_at
96
1415683_at
1861.8
1415684_at
263.1
1415685_at
121.3
1415686_at
294.9
1415687_a_at
6428.6
1415688_at
402.8
1415689_s_at
155.3
Total number of rows:
18858
Table truncated, full table size
301 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM442518.CEL.gz
2.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
