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GEO accession:
Sample GSM442525
Query DataSets for GSM442525
Status
Public on Oct 09, 2009
Title
Grd, 2_hours, rep2
Sample type
RNA
Source name
Grd, 2_hours
Organism
Mus musculus
Characteristics
cell type: primary bone marrow dendritic cell
Treatment protocol
NA
Growth protocol
mouse primary BMDCs (Amit et al. 2009)
Extracted molecule
total RNA
Extraction protocol
miRNEASY (QIAGEN) as recommended by manufactor
Label
Biotin
Label protocol
Standard Affymetrix protocols for mouse ht arrays
Hybridization protocol
Standard Affymetrix protocols for mouse ht arrays
Scan protocol
Standard Affymetrix protocols for mouse ht arrays
Description
5500144052237031609409.H03
Data processing
RMA - All values lower than 20 were replaced by 20. All probesets whose values in all samples are equal or below 20 were removed.
Submission date
Aug 19, 2009
Last update date
Oct 09, 2009
Contact name
Tal Shay
Organization name
Broad Institute
Street address
7CC
City
Cambridge
State/province
MA
ZIP/Postal code
02139
Country
USA
Platform ID
GPL8759
Series (1)
GSE17721
Dendritic cell stimulation: 5 ligands, 9 time points
Data table header descriptions
ID_REF
VALUE
RMA normalized intensity for probe set
Data table
ID_REF
VALUE
1415670_at
302.6
1415671_at
1729.4
1415672_at
1382.2
1415673_at
43.8
1415674_a_at
451.9
1415675_at
268.3
1415676_a_at
1404.8
1415677_at
210.5
1415678_at
499.1
1415679_at
1079.2
1415680_at
295.3
1415681_at
309.2
1415682_at
61.4
1415683_at
1626.2
1415684_at
216.7
1415685_at
82.6
1415686_at
208.5
1415687_a_at
8720
1415688_at
337.7
1415689_s_at
110.8
Total number of rows:
18858
Table truncated, full table size
300 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM442525.CEL.gz
2.3 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
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