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| Status |
Public on Mar 03, 2005 |
| Title |
FAT #2, chip MOE430B |
| Sample type |
RNA |
| |
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| Source name |
Spheres, Adipose tissue
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| Organism |
Mus musculus |
| Characteristics |
Strain: Balb/C
Karyotype: Normal, diploid
Defining markers: unknown
|
| Extracted molecule |
total RNA |
| Label |
Biotin
|
| |
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| Description |
This sample was analyzed as part of the Stem Cell Genomics Project (http://www.scgp.ca:8080/StemBase/). The biological material was submitted to the Ontario Genomics Innovation Centre (http://www.ottawagenomecenter.ca/) by Dr. Michael Rudnicki (mrudnicki@ohri.ca; 501 Smyth Road) for analysis.
Stembase Experiment ID: E158
Stembase Experiment ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=158
SCGP Sample ID: S199
SCGP Sample ID link: http://www.scgp.ca:8080/StemBase/?path=/browse/experiment&id=158#SAMPLE_159
Estimated purity: unknown
RNA concentration: 100ng/ul
Sample volume: 5
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| Submission date |
Mar 01, 2005 |
| Last update date |
Jan 19, 2006 |
| Organization |
Ottawa Hospital Research Institute |
| Phone |
(613) 737-8899 -73255
|
| Department |
Cellular and Molecular Medicine
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| Lab |
Ottawa Bioinformatics Core Facility
|
| Street address |
501 Smyth Rd.
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| City |
Ottawa |
| State/province |
ON |
| ZIP/Postal code |
K1H 8L6 |
| Country |
Canada |
| |
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| Platform ID |
GPL340 |
| Series (1) |
| GSE2353 |
Adipose, dermis and neural embryonic stem cells |
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| Data table header descriptions |
| ID_REF |
|
| VALUE |
'signal' a measure of the abundance of a transcript. Calculated using the MAS5 algorithm where sc=1500, tau=0.015, alpha1=0.04, and alpla2=0.06. |
| ABS_CALL |
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC) |
| DETECTION P-VALUE |
'detection p-value', p-value that indicates the significance level of the detection call |
| Data table |
| ID_REF |
VALUE |
ABS_CALL |
DETECTION P-VALUE |
| AFFX-BioB-5_at |
51175.5 |
P |
0.000195116 |
| AFFX-BioB-M_at |
86144 |
P |
4.42873e-05 |
| AFFX-BioB-3_at |
71934.5 |
P |
4.42873e-05 |
| AFFX-BioC-5_at |
166613 |
P |
4.42873e-05 |
| AFFX-BioC-3_at |
90709.9 |
P |
4.42873e-05 |
| AFFX-BioDn-5_at |
128395 |
P |
4.42873e-05 |
| AFFX-BioDn-3_at |
559280 |
P |
4.42873e-05 |
| AFFX-CreX-5_at |
1.2385e+06 |
P |
4.42873e-05 |
| AFFX-CreX-3_at |
1.77396e+06 |
P |
4.42873e-05 |
| AFFX-DapX-5_at |
400201 |
P |
4.42873e-05 |
| AFFX-DapX-M_at |
1.46274e+06 |
P |
4.42873e-05 |
| AFFX-DapX-3_at |
1.82741e+06 |
P |
4.42873e-05 |
| AFFX-LysX-5_at |
248907 |
P |
4.42873e-05 |
| AFFX-LysX-M_at |
1.20977e+06 |
P |
4.42873e-05 |
| AFFX-LysX-3_at |
1.87208e+06 |
P |
4.42873e-05 |
| AFFX-PheX-5_at |
45882.1 |
P |
4.42873e-05 |
| AFFX-PheX-M_at |
201177 |
P |
4.42873e-05 |
| AFFX-PheX-3_at |
1.17151e+06 |
P |
4.42873e-05 |
| AFFX-ThrX-5_at |
6591.58 |
P |
0.00618711 |
| AFFX-ThrX-M_at |
25564 |
P |
5.16732e-05 |
Total number of rows: 22575
Table truncated, full table size 662 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM44318.CEL.gz |
3.0 Mb |
(ftp)(http) |
CEL |
| GSM44318.EXP.gz |
507 b |
(ftp)(http) |
EXP |
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