 |
 |
GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Oct 13, 2009 |
| Title |
hESC-TAFII-1a |
| Sample type |
SRA |
| |
|
| Source name |
embryonic stem cells
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: H1
chip antibody: TAFII
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
See http://bioinformatics-renlab.ucsd.edu/RenLabLibraryProtocolV1.pdf
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
Base calling performed with Illumina Genome Analyzer Pipeline Software version 0.3
eland_multi
- Generated using ELAND
- ELAND parameters:
1. Mapping length: 25 bases
2. Maximum number of matches (0 mismatches, 1 mismatch, 2 mismatches): 250,250,250
bed (hg18)
- Generated using a custom perl script
- Input was the eland_multi file.
- Only reads mapping uniquely were retained.
- Read length is 36
- The score field contains the number of copies of the read
|
| |
|
| Submission date |
Sep 01, 2009 |
| Last update date |
May 15, 2019 |
| Contact name |
Bing Ren |
| E-mail(s) |
biren@ucsd.edu
|
| Organization name |
University of California, San Diego
|
| Street address |
9500 Gilman Drive
|
| City |
La Jolla |
| State/province |
CA |
| ZIP/Postal code |
92093 |
| Country |
USA |
| |
|
| Platform ID |
GPL9052 |
| Series (1) |
| GSE17917 |
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells |
|
| Relations |
| SRA |
SRX011575 |
| BioSample |
SAMN00003902 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM447586_UCSD_20CEDAAXX_7.bed.gz |
44.2 Mb |
(ftp)(http) |
BED |
| GSM447586_UCSD_20CEDAAXX_7_eland_multi.txt.gz |
400.0 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Processed data provided as supplementary file |
| Raw data are available in SRA |
|
|
|
|
 |
