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Sample GSM449555 Query DataSets for GSM449555
Status Public on Jan 28, 2010
Title C57BL/6J Hippocampus (1855537013_A)
Sample type RNA
 
Source name Mouse Hippocampus
Organism Mus musculus
Characteristics age: 3-4 months
gender: M
strain: C57BL/6J
brain region: Hippocampus
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser. Concentrations were det
Label biotin
Label protocol RNA samples were prepared with the Illumina TotalPrep kit amplification and labeling protocol. Amplified and biotinylated CRNA was measured with a ribogreen assay
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description 1855537013_A
Data processing Data were backgroundcorrected in Beadstudio and transformed (vst) and normalised (rsn) in Lumi (R package)
 
Submission date Sep 03, 2009
Last update date May 16, 2011
Contact name Simone de Jong
E-mail(s) s.dejong-6@umcutrecht.nl
Organization name UMC Utrecht
Department Medical Genetics
Street address Universiteitsweg 100
City Utrecht
ZIP/Postal code 3584 CG
Country Netherlands
 
Platform ID GPL6103
Series (1)
GSE17955 Amygdalae and hippocampi of C57BL/6J and A/J mouse inbred strains

Data table header descriptions
ID_REF
VALUE Robust spline normalized
DETECTION VALUE

Data table
ID_REF VALUE DETECTION VALUE
ILMN_2638923 8.605212095 1
ILMN_3162403 7.662617229 0.88821
ILMN_3163582 7.637409875 0.71376
ILMN_3161639 7.991398295 1
ILMN_3162754 7.65095026 0.81818
ILMN_3162129 7.66190329 0.88698
ILMN_3160253 7.686519949 0.9656
ILMN_3162224 8.791487607 1
ILMN_3160610 7.632090938 0.67322
ILMN_3161596 7.615409668 0.55651
ILMN_3162495 7.655186428 0.84767
ILMN_3162089 7.928205273 1
ILMN_3160881 8.022489379 1
ILMN_2495864 10.43383322 1
ILMN_1220172 11.08205665 1
ILMN_2588050 11.7523067 1
ILMN_1377918 9.730772032 1
ILMN_3160348 7.649923284 0.81327
ILMN_3162388 7.901725838 1
ILMN_3162771 7.767664831 1

Total number of rows: 24613

Table truncated, full table size 754 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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