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Sample GSM449718 Query DataSets for GSM449718
Status Public on Sep 04, 2012
Title young growing oocyte-1
Sample type RNA
 
Source name young growing oocyte-1
Organism Mus musculus
Characteristics strain: C57BL/6
age: 6-8 weeks old
tissue: oocytes
developmental stage: growing (60-80um diameter)
Extracted molecule total RNA
Extraction protocol Total RNAs were isolated using mirVana miRNA Isolation Kit (Applied Biosystems).
Label cyanine 3
Label protocol according to manufacturer protocol
 
Hybridization protocol according to manufacturer protocol
Scan protocol Microarray slides were scanned at 5-um resolution using an Agilent microarray scanner G2565BA (Agilent technology).
Description Young growing oocyte-1 were derived from 6-8-week-old C57BL/6 mice. The oocytes were selected as the diameter of more than 60 um.
Data processing The resulting images were quantified using Agilent Feature Extraction Software V 9.5. Exactly 100ng of total RNA were used for each samples. The signal =< 10 and negative were normalized to 0.
 
Submission date Sep 04, 2009
Last update date Sep 04, 2012
Contact name Maki Kusumi
E-mail(s) kusumim-tky@umin.net
Phone +81-3-3416-0181
Fax +81-3-3417-2864
Organization name National Research Institute for Child Health and Development
Department Maternal-Fetal Biology
Street address 2-10-1 Okura
City Setagaya
State/province Tokyo
ZIP/Postal code 157-8535
Country Japan
 
Platform ID GPL8824
Series (1)
GSE17966 oocyte miRNA profiling by array

Data table header descriptions
ID_REF
VALUE signal intensity (negative and values less than 10 normalized to 0)

Data table
ID_REF VALUE
DarkCorner 0
NC1_00000197 0
NC1_00000215 0
NC2_00079215 0
NC2_00092197 0
NC2_00106057 0
NC2_00122731 0
NegativeControl 12.0315
SCorner3 0
dmr_285 0
dmr_3 0
dmr_308 0
dmr_316 0
dmr_31a 0
dmr_6 0
hur_1 11580.4
hur_2 47510.7
hur_4 4997.51
hur_5 0
hur_6 8970.8

Total number of rows: 598

Table truncated, full table size 9 Kbytes.




Supplementary file Size Download File type/resource
GSM449718.txt.gz 6.9 Kb (ftp)(http) TXT
Processed data included within Sample table

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