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Sample GSM449724 Query DataSets for GSM449724
Status Public on Sep 04, 2012
Title young non-growng oocyte-2
Sample type RNA
 
Source name young non-growing oocyte-2
Organism Mus musculus
Characteristics strain: C57BL/6
age: 6-8 weeks old
tissue: oocytes
developmental stage: promordial follicle (20-50um diameter)
Extracted molecule total RNA
Extraction protocol Total RNAs were isolated using mirVana miRNA Isolation Kit (Applied Biosystems).
Label cyanine 3
Label protocol according to manufacturer protocol
 
Hybridization protocol according to manufacturer protocol
Scan protocol Microarray slides were scanned at 5-um resolution using an Agilent microarray scanner G2565BA (Agilent technology).
Description Young non-growing oocyte-2 were derived from 6-8-week-old C57BL/6 mice. The oocytes were selected as the diameter of smaller than 60 um.
Data processing Exactly 100ng of total RNA were used for each samples. The resulting images were quantified using Agilent Feature Extraction Software V 9.5. The signal =< 10 and negative were normalized to 0.
 
Submission date Sep 04, 2009
Last update date Sep 04, 2012
Contact name Maki Kusumi
E-mail(s) kusumim-tky@umin.net
Phone +81-3-3416-0181
Fax +81-3-3417-2864
Organization name National Research Institute for Child Health and Development
Department Maternal-Fetal Biology
Street address 2-10-1 Okura
City Setagaya
State/province Tokyo
ZIP/Postal code 157-8535
Country Japan
 
Platform ID GPL8824
Series (1)
GSE17966 oocyte miRNA profiling by array

Data table header descriptions
ID_REF
VALUE signal intensity (negative and values less than 10 normalized to 0)

Data table
ID_REF VALUE
DarkCorner 0
NC1_00000197 0
NC1_00000215 0
NC2_00079215 0
NC2_00092197 0
NC2_00106057 0
NC2_00122731 0
NegativeControl 15.5129
SCorner3 0
dmr_285 0
dmr_3 0
dmr_308 0
dmr_316 0
dmr_31a 0
dmr_6 0
hur_1 4981.47
hur_2 18147.7
hur_4 1846.31
hur_5 0
hur_6 3278.94

Total number of rows: 598

Table truncated, full table size 8 Kbytes.




Supplementary file Size Download File type/resource
GSM449724.txt.gz 7.0 Kb (ftp)(http) TXT
Processed data included within Sample table

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