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Sample GSM458536 Query DataSets for GSM458536
Status Public on Mar 22, 2010
Title MELB
Sample type SRA
 
Source name melanocyte
Organism Homo sapiens
Characteristics cell line: primary melanocyte
Extracted molecule total RNA
Extraction protocol The small RNA libraries were constructed using a Digital Gene Expression (DGE) Small RNA sample prep kit (Illumina, San Diego, Ca) as per the manufacturer's instructions.
 
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer II
 
Description We sequenced 12 small RNA libraries using Illumina's GAII platform.
Processed data file build: hg18
Data processing Illumina Pipeline software followed by miRanalyzer for miRNA analysis
 
Submission date Oct 02, 2009
Last update date May 15, 2019
Contact name Mitchell Stark
E-mail(s) mitchelS@qimr.edu.au
Organization name QIMR
Street address 300 Herston Rd Herston
City Brisbane
ZIP/Postal code 4006
Country Australia
 
Platform ID GPL9115
Series (1)
GSE18381 Characterization of the melanoma miRNAome by deep sequencing
Relations
SRA SRX018397
BioSample SAMN00010664

Data table header descriptions
SEQUENCE
COUNT unique read count

Data table
SEQUENCE COUNT
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTCTT 365103
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTCTT 157526
TCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAAAAA 57920
TGAGGTAGTAGATTGTATAGTTTCGTATTCCGTCTT 35744
TGAGGTAGGAGGTTGTATAGTTTCGTATGCCGTCTT 22982
TGAGGTAGTAGATTGTATAGTTATCGTATGCCGTCT 21564
TGAGGTAGTAGTTTGTGCTGTTTCGTATGCCGTCTT 19419
TAGCACCATCTGAAATCGGTTATCGTATGCCGTCTT 18444
TGAGGTAGTAGGTTGTGTGGTTTCGTATGCCGTCTT 17693
TGAGGTAGTAGATTGTATAGTTTCGTATGCCTTCTT 16961
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTTTT 16790
AGAGGTAGTAGGTTGCATAGTTTCGTATGCCGTCTT 16096
TGAGGTAGTAGATTGTATAGTTTCTTATGCCGTCTT 14807
TGAGGTAGTAGTTTGTACAGTTTCGTATGCCGTCTT 14726
ACTGGACTTGGAGTCAGAAGGCTCGTATGCCGTCTT 13795
TGAGGTAGTAGGTTGTATAGTTTCGTATTCCGTCTT 13148
TGAGGGGCAGAGAGCGAGACTTTTCGTATGCCGTCT 12041
AGCAGCATTGTACAGGGCTATGATCGTATGCCGTCT 10565
TGAGGTAGTAGGTTGTATAGTTATCGTATGCCGTCT 10309
AAAAGCTGGGTTGAGAGGGCGATCGTATGCCGTCTT 9136

Total number of rows: 53413

Table truncated, full table size 2044 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA

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