NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM459866 Query DataSets for GSM459866
Status Public on Oct 01, 2013
Title Wt_cycling_rep3
Sample type RNA
 
Source name Wt MEF cycling cells
Organism Mus musculus
Characteristics cell type: mouse embryonic fibroblasts (MEF)
phase: cycling
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was extracted with Ambion mirVana, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol, with Illumina iScan System.
Description 4655400089_A
Data processing The data were normalised using quantile normalisation with BeadStudio 3.0
 
Submission date Oct 07, 2009
Last update date Oct 01, 2013
Contact name Riccardo Lorenzo Rossi
E-mail(s) rossi@ingm.it
URL http://www.ingm.it
Organization name Fondazione INGM
Department Integrative Biology
Lab Pagani
Street address Via Trivulzio 10
City Milano
State/province MI
ZIP/Postal code 20149
Country Italy
 
Platform ID GPL6885
Series (1)
GSE18463 The effects of Hmgb1 depletion on gene expression in murine cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1118.833 0
ILMN_2721178 209.1973 0
ILMN_3033922 638.7199 0
ILMN_3092673 3020.251 0
ILMN_2816356 147.202 0
ILMN_2808939 1007.376 0
ILMN_2634564 359.3087 0
ILMN_2737647 100.534 0.4761905
ILMN_2734484 300.5476 0
ILMN_2952292 138.6556 0
ILMN_2699078 101.4611 0.4335839
ILMN_1213681 269.8033 0
ILMN_2735413 91.36636 0.877193
ILMN_2735415 99.99345 0.5075188
ILMN_2891688 599.9006 0
ILMN_2637698 3703.042 0
ILMN_2674228 169.5987 0
ILMN_2601546 90.60332 0.8997494
ILMN_1230831 111.4132 0.1240602
ILMN_2848071 99.11908 0.5438597

Total number of rows: 25697

Table truncated, full table size 716 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap