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Sample GSM459867 Query DataSets for GSM459867
Status Public on Oct 01, 2013
Title Wt_cycling_rep1
Sample type RNA
 
Source name Wt MEF cycling cells
Organism Mus musculus
Characteristics cell type: mouse embryonic fibroblasts (MEF)
phase: cycling
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was extracted with Ambion mirVana, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol, with Illumina iScan System.
Description 4655400089_C
Data processing The data were normalised using quantile normalisation with BeadStudio 3.0
 
Submission date Oct 07, 2009
Last update date Oct 01, 2013
Contact name Riccardo Lorenzo Rossi
E-mail(s) rossi@ingm.it
URL http://www.ingm.it
Organization name Fondazione INGM
Department Integrative Biology
Lab Pagani
Street address Via Trivulzio 10
City Milano
State/province MI
ZIP/Postal code 20149
Country Italy
 
Platform ID GPL6885
Series (1)
GSE18463 The effects of Hmgb1 depletion on gene expression in murine cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2350.331 0
ILMN_2721178 374.3159 0
ILMN_3033922 812.5219 0
ILMN_3092673 3575.758 0
ILMN_2816356 143.6725 0
ILMN_2808939 1351.367 0
ILMN_2634564 700.3735 0
ILMN_2737647 114.1318 0.0989975
ILMN_2734484 570.5134 0
ILMN_2952292 167.5181 0
ILMN_2699078 102.6767 0.4298246
ILMN_1213681 173.9828 0
ILMN_2735413 97.74342 0.6340852
ILMN_2735415 114.8109 0.08897243
ILMN_2891688 1183.91 0
ILMN_2637698 2790.252 0
ILMN_2674228 238.6376 0
ILMN_2601546 108.7918 0.2117794
ILMN_1230831 98.02959 0.6190476
ILMN_2848071 107.828 0.2406015

Total number of rows: 25697

Table truncated, full table size 722 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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