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Sample GSM459868 Query DataSets for GSM459868
Status Public on Oct 01, 2013
Title Wt_cycling_rep2
Sample type RNA
 
Source name Wt MEF cycling cells
Organism Mus musculus
Characteristics cell type: mouse embryonic fibroblasts (MEF)
phase: cycling
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol RNA was extracted with Ambion mirVana, in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol, with Illumina iScan System.
Description 4655400089_E
Data processing The data were normalised using quantile normalisation with BeadStudio 3.0
 
Submission date Oct 07, 2009
Last update date Oct 01, 2013
Contact name Riccardo Lorenzo Rossi
E-mail(s) rossi@ingm.it
URL http://www.ingm.it
Organization name Fondazione INGM
Department Integrative Biology
Lab Pagani
Street address Via Trivulzio 10
City Milano
State/province MI
ZIP/Postal code 20149
Country Italy
 
Platform ID GPL6885
Series (1)
GSE18463 The effects of Hmgb1 depletion on gene expression in murine cells

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2329.894 0
ILMN_2721178 408.2388 0
ILMN_3033922 961.7072 0
ILMN_3092673 4419.344 0
ILMN_2816356 111.5091 0.1804511
ILMN_2808939 1363.09 0
ILMN_2634564 725.2586 0
ILMN_2737647 86.11037 0.9786968
ILMN_2734484 564.8087 0
ILMN_2952292 187.5645 0.002506266
ILMN_2699078 104.6488 0.3609022
ILMN_1213681 216.8201 0.001253133
ILMN_2735413 85.27892 0.9862155
ILMN_2735415 105.1553 0.3408521
ILMN_2891688 1000.499 0
ILMN_2637698 2306.37 0
ILMN_2674228 307.3943 0
ILMN_2601546 92.05297 0.8596491
ILMN_1230831 92.84853 0.8358396
ILMN_2848071 103.3315 0.4160401

Total number of rows: 25697

Table truncated, full table size 744 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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